RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 BEX2Q9BXY8 128 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 SLC19A3Q9BZV2 496 aa16.21■□□□□ 0.19
CCDC88B-206ENST00000473405 NBEAL1Q6ZS30 2694 aa16.21■□□□□ 0.18
CCDC88B-206ENST00000473405 RNF212BA8MTL3 300 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 LMX1BO60663 402 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 STAMBPO95630 424 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 ASAH2BP0C7U1 165 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 APEHP13798 732 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF23P17027 643 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 GIPRP48546 466 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 PTDSS1P48651 473 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 ZP4Q12836 540 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 RABL3Q5HYI8 236 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 INTS11Q5TA45 600 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 METTL21CQ5VZV1 264 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 NANOGP8Q6NSW7 305 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 TTC33Q6PID6 262 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 CCDC80Q76M96 950 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 SNX32Q86XE0 403 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF584Q8IVC4 421 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 FGFBP3Q8TAT2 258 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 MPP4Q96JB8 637 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 MRPL37Q9BZE1 423 aaKnown RBP16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 NANOGQ9H9S0 305 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 MEPEQ9NQ76 525 aaPredicted RBP16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 NANSQ9NR45 359 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 GLTPQ9NZD2 209 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 LPAR3Q9UBY5 353 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF229Q9UJW7 825 aa16.2■□□□□ 0.18
CCDC88B-206ENST00000473405 LOC100289279A0A1B0GTE1 492 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 SH3PXD2BA1X283 911 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 PHF1O43189 567 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 SASH3O75995 380 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 OR6A2O95222 327 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 PGA4P0DJD7 388 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 PGA3P0DJD8 388 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 RAB1AP62820 205 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 MELKQ14680 651 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 FXNQ16595 210 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 IQCCQ4KMZ1 466 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 FAM166AQ6J272 317 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 LRFN4Q6PJG9 635 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 PIWIL3Q7Z3Z3 882 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 CALHM3Q86XJ0 350 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 SKA3Q8IX90 412 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 NEU4Q8WWR8 484 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 MRPL24Q96A35 216 aaKnown RBP16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 TMEM120AQ9BXJ8 343 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 SHARPINQ9H0F6 387 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 DENND2DQ9H6A0 471 aaPredicted RBP16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 CHODLQ9H9P2 273 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 DYNLRB1Q9NP97 96 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 CMAHPQ9Y471 501 aa16.19■□□□□ 0.18
CCDC88B-206ENST00000473405 LRP5LA4QPB2 252 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 VSTM5A8MXK1 200 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 RNF13O43567 381 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 UBL3O95164 117 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 RAB36O95755 333 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 ERCC1P07992 297 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 ADRA2AP08913 450 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 TACSTD2P09758 323 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 PATE4P0C8F1 98 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 TNFRSF1BP20333 461 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 IL17RELQ6ZVW7 336 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF786Q8N393 782 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 SLC22A24Q8N4F4 322 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF540Q8NDQ6 660 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 SLC26A7Q8TE54 656 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 ZNF566Q969W8 418 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 SLC25A44Q96H78 314 aaPredicted RBP16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 TPK1Q9H3S4 243 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 TMEM38BQ9NVV0 291 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 KCNS2Q9ULS6 477 aa16.18■□□□□ 0.18
CCDC88B-206ENST00000473405 IL2RGP31785 369 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 GLRXP35754 106 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 EVX1P49640 407 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 RIN1Q13671 783 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 CYLC2Q14093 348 aaPredicted RBP16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 RAB39AQ14964 217 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 FAM120AOSQ5T036 256 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 NANOGNBQ7Z5D8 188 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 CARM1Q86X55 608 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 OR8J3Q8NGG0 315 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 RASSF5Q8WWW0 418 aa16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 MYEF2Q9P2K5 600 aaKnown RBP16.17■□□□□ 0.18
CCDC88B-206ENST00000473405 SYNGR3O43761 229 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 LILRA1O75019 489 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 UGT2B15P54855 530 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 RUNX1T1Q06455 604 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 HIST3H3Q16695 136 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 COQ5Q5HYK3 327 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 CGB2Q6NT52 195 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 LRP11Q86VZ4 500 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 PFN4Q8NHR9 129 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 TMEM255BQ8WV15 326 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 TMEM158Q8WZ71 300 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 LRRC58Q96CX6 371 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 SEPHS2Q99611 448 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 SH3GL3Q99963 347 aa16.16■□□□□ 0.18
CCDC88B-206ENST00000473405 SYT3Q9BQG1 590 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms