RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 M0R233 179 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 SYNGR3O43761 229 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 UBL3O95164 117 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 LYNX1P0DP58 116 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 GLRXP35754 106 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 EVX1P49640 407 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 SRSF2Q01130 221 aaKnown RBP16.5■□□□□ 0.23
COL9A3-206ENST00000466532 GALK2Q01415 458 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 ZNF74Q16587 644 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 CR1LQ2VPA4 569 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 GKAP1Q5VSY0 366 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-206ENST00000466532 TTC33Q6PID6 262 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-206ENST00000466532 WDR88Q6ZMY6 472 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 SLC35D2Q76EJ3 337 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 RETREG3Q86VR2 466 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 DPP10Q8N608 796 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 VANGL1Q8TAA9 524 aaPredicted RBP16.5■□□□□ 0.23
COL9A3-206ENST00000466532 HPS1Q92902 700 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 TMEM54Q969K7 222 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 SYT3Q9BQG1 590 aa16.5■□□□□ 0.23
COL9A3-206ENST00000466532 CH25HO95992 272 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 THY1P04216 161 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 RIN1Q13671 783 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 RAB39AQ14964 217 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 TRIP10Q15642 601 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 PIWIL3Q7Z3Z3 882 aaKnown RBP16.49■□□□□ 0.23
COL9A3-206ENST00000466532 RBM45Q8IUH3 476 aaKnown RBP16.49■□□□□ 0.23
COL9A3-206ENST00000466532 SLC30A8Q8IWU4 369 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 LINC01356Q8N9X3 169 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 OR4D11Q8NGI4 311 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 OR6X1Q8NH79 312 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 ADAMTS16Q8TE57 1224 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 STON2Q8WXE9 905 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 NANSQ9NR45 359 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 INTS9Q9NV88 658 aaKnown RBP16.49■□□□□ 0.23
COL9A3-206ENST00000466532 TAS2R5Q9NYW4 299 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 GLTPQ9NZD2 209 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 REV1Q9UBZ9 1251 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 FBXL3Q9UKT7 428 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 SLC7A7Q9UM01 511 aa16.49■□□□□ 0.23
COL9A3-206ENST00000466532 KPNA4O00629 521 aaPredicted RBP16.48■□□□□ 0.23
COL9A3-206ENST00000466532 RNF13O43567 381 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 LYPD3O95274 346 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 PATE4P0C8F1 98 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 LSP1P33241 339 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 RPS23P62266 143 aaKnown RBP16.48■□□□□ 0.23
COL9A3-206ENST00000466532 ZP4Q12836 540 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 NFYCQ13952 458 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 MELKQ14680 651 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 FXNQ16595 210 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 PATL1Q86TB9 770 aaKnown RBP16.48■□□□□ 0.23
COL9A3-206ENST00000466532 SKA3Q8IX90 412 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 SLC22A24Q8N4F4 322 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 SLC26A7Q8TE54 656 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 ZNF566Q969W8 418 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 C19orf24Q9BVV8 132 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 MS4A5Q9H3V2 200 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 ZNF385DQ9H6B1 395 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 TRIM33Q9UPN9 1127 aa16.48■□□□□ 0.23
COL9A3-206ENST00000466532 TRAPPC13A5PLN9 417 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 TCN1P20061 433 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-206ENST00000466532 CD247P20963 164 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 PCGF2P35227 344 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 ALDH3B1P43353 468 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 TSPYL5Q86VY4 417 aaPredicted RBP16.47■□□□□ 0.23
COL9A3-206ENST00000466532 LRP11Q86VZ4 500 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 ZNF584Q8IVC4 421 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 LRRC17Q8N6Y2 441 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 FGFBP3Q8TAT2 258 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 TAMM41Q96BW9 452 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 MPP4Q96JB8 637 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 KAT8Q9H7Z6 458 aaKnown RBP16.47■□□□□ 0.23
COL9A3-206ENST00000466532 MYEF2Q9P2K5 600 aaKnown RBP16.47■□□□□ 0.23
COL9A3-206ENST00000466532 SLC7A8Q9UHI5 535 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 ZNF229Q9UJW7 825 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 FZR1Q9UM11 496 aa16.47■□□□□ 0.23
COL9A3-206ENST00000466532 HIST1H2ABP04908 130 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 SERPINA5P05154 406 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 OR8G3PP0DMU2 310 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 UMPSP11172 480 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 SEC24CP53992 1094 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 CDH15P55291 814 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 CCNIQ14094 377 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 MAD2L1BPQ15013 274 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-206ENST00000466532 ELFN2Q5R3F8 820 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 UGT2A3Q6UWM9 527 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 HIST3H2AQ7L7L0 130 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 OR10A6Q8NH74 314 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 TSPEARQ8WU66 669 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 HIST1H2ACQ93077 130 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 SLC25A44Q96H78 314 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-206ENST00000466532 MAGEB18Q96M61 343 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 SH3GL3Q99963 347 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 SLC19A3Q9BZV2 496 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 TMEM38BQ9NVV0 291 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 DUSP13Q9UII6 198 aa16.46■□□□□ 0.23
COL9A3-206ENST00000466532 TMEFF2Q9UIK5 374 aaPredicted RBP16.46■□□□□ 0.23
COL9A3-206ENST00000466532 DHHO43323 396 aa16.45■□□□□ 0.22
COL9A3-206ENST00000466532 ENTPD5O75356 428 aa16.45■□□□□ 0.22
COL9A3-206ENST00000466532 FARS2O95363 451 aaKnown RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms