RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 Q6ZT83 130 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 HIST3H2AQ7L7L0 130 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 NANOGNBQ7Z5D8 188 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 PXKQ7Z7A4 578 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 EPHX4Q8IUS5 362 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 ZNF100Q8IYN0 542 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 OR52J3Q8NH60 311 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 HIST1H2ACQ93077 130 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 APH1AQ96BI3 265 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 ESRP2Q9H6T0 727 aaKnown RBP10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 NGBQ9NPG2 151 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 PARPBPQ9NWS1 579 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 AURKCQ9UQB9 309 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 TMEM5Q9Y2B1 443 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 TENM1Q9UKZ4 2725 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 PRR14LQ5THK1 2151 aa10.45□□□□□ -0.74
SQSTM1-206ENST00000466342 SH3PXD2BA1X283 911 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 TRAF3IP2O43734 574 aaPredicted RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 CIB2O75838 187 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 KRT36O76013 467 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 ADAP00813 363 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 TSPAN19P0C672 248 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 SAGP10523 405 aaPredicted RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 EGR1P18146 543 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 MAKP20794 623 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 AHCYP23526 432 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 IL32P24001 234 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 EDNRAP25101 427 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 GPR4P46093 362 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 ERFP50548 548 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 IL1RL1Q01638 556 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 GABPB1Q06547 395 aaPredicted RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 ZP4Q12836 540 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 C1DQ13901 141 aaKnown RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 SEC23BQ15437 767 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 C1orf146Q5VVC0 180 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 OR2T5Q6IEZ7 315 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 CASP12Q6UXS9 341 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 C12orf54Q6X4T0 127 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 TMPRSS11FQ6ZWK6 438 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 AAED1Q7RTV5 226 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 WFDC8Q8IUA0 241 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 UEVLDQ8IX04 471 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 CDK20Q8IZL9 346 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 OR4K5Q8NGD3 323 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 OR2T29Q8NH02 315 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 HSD17B8Q92506 261 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 AKAP1Q92667 903 aaKnown RBP eCLIP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 UTP4Q969X6 686 aaKnown RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 GTPBP3Q969Y2 492 aaKnown RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 PLPPR2Q96GM1 343 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 TNFRSF13CQ96RJ3 184 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 RHNO1Q9BSD3 238 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 TMEM204Q9BSN7 226 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 CHID1Q9BWS9 393 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 KRCC1Q9NPI7 259 aaPredicted RBP10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 TAS2R5Q9NYW4 299 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 PRSS50Q9UI38 385 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 RCE1Q9Y256 329 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 NOX1Q9Y5S8 564 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 LYVE1Q9Y5Y7 322 aa10.44□□□□□ -0.74
SQSTM1-206ENST00000466342 ALPK2Q86TB3 2170 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 EFCAB9A8MZ26 197 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 C11orf98E9PRG8 122 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 BLOC1S5-TXNDC5H3BN57 136 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 AKAP8O43823 692 aaKnown RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 IGHV4-39P01824 125 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 HLA-DOBP13765 273 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 CDKN1AP38936 164 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 OMPP47874 163 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 LIMS1P48059 325 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 SLC9A3P48764 834 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 HMGA2P52926 109 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 CLDN17P56750 224 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 POU3F1Q03052 451 aaPredicted RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 RPL18Q07020 188 aaKnown RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 ANKDD1AQ495B1 522 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 FBXW9Q5XUX1 488 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 NIPAL3Q6P499 406 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 SSX8Q7RTT4 187 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 MEX3DQ86XN8 651 aaKnown RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 ARIH2OSQ8N7S6 290 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 PAPD5Q8NDF8 572 aaKnown RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 ANKK1Q8NFD2 765 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 KISS1RQ969F8 398 aaPredicted RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 S100PBPQ96BU1 408 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 FAM46AQ96IP4 442 aaKnown RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 RSRC1Q96IZ7 334 aaKnown RBP10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 MALT1Q9UDY8 824 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 TMCC3Q9ULS5 477 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 HIF3AQ9Y2N7 669 aa10.43□□□□□ -0.74
SQSTM1-206ENST00000466342 A0A096LNT2 108 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 TNFRSF11BO00300 401 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 CDC42EP2O14613 210 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 RNF13O43567 381 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 OR10H3O60404 316 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 LMX1BO60663 402 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 FKBP6O75344 327 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 SERPINI2O75830 405 aa10.42□□□□□ -0.74
SQSTM1-206ENST00000466342 ZNF432O94892 652 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms