RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 NR4A1P22736 598 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 GIFP27352 417 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 THBS4P35443 961 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 KRTAP1-1Q07627 177 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 NPRL3Q12980 569 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 ADIPOQQ15848 244 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 NRN1LQ496H8 165 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 PAGE3Q5JUK9 113 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 DHDDSQ86SQ9 333 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 ZNF786Q8N393 782 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 PCYOX1LQ8NBM8 494 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 FNDC8Q8TC99 324 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 CKAP2Q8WWK9 683 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 ZNF566Q969W8 418 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 FOXN4Q96NZ1 517 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 CGREF1Q99674 301 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 ARHGDIGQ99819 225 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 ECSITQ9BQ95 431 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 NDEL1Q9GZM8 345 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 GID8Q9NWU2 228 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 SLC25A37Q9NYZ2 338 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 VAPAQ9P0L0 249 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 REV1Q9UBZ9 1251 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 SLC7A8Q9UHI5 535 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 ZNF229Q9UJW7 825 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 CHST2Q9Y4C5 530 aa6.74□□□□□ -1.33
CD44-211ENST00000442151 IGHV2OR16-5A0A0B4J2B6 119 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 IQCMA0A1B0GVH7 501 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 A0A1W2PRG6 482 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 VWC2LB2RUY7 222 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 RNF13O43567 381 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 IGF2P01344 180 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 THRBP10828 461 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 IFNGR1P15260 489 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 HOXB9P17482 250 aaPredicted RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 CBLP22681 906 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 HTR2AP28223 471 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 RBM34P42696 430 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 RAD52P43351 418 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 CDH12P55289 794 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 RAB1AP62820 205 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 MRPS11P82912 194 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 SLC25A3Q00325 362 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 HOXC5Q00444 222 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SNTB2Q13425 540 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 TAF11Q15544 211 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 ADRM1Q16186 407 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SLC36A2Q495M3 483 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 MDP1Q86V88 176 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 TMEM123Q8N131 208 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SLC25A44Q96H78 314 aaPredicted RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 SORCS2Q96PQ0 1159 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 FOXB1Q99853 325 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 CPPED1Q9BRF8 314 aaPredicted RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 ZNF416Q9BWM5 594 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 RNF121Q9H920 327 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SLCO1C1Q9NYB5 712 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 GLTPQ9NZD2 209 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 B3GAT1Q9P2W7 334 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 DNHD1Q96M86 4753 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 HRNRQ86YZ3 2850 aaPredicted RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 TRBV5-3A0A0A0MS03 114 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 BBIP1A8MTZ0 92 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 M0R233 179 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 TRAF3IP2O43734 574 aaPredicted RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 GPRIN2O60269 458 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 TPST1O60507 370 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 TGFAP01135 160 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 IGHG1P01857 330 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SERPINA5P05154 406 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 UMPSP11172 480 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 PCGF2P35227 344 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 DAP3P51398 398 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 TMEM33P57088 247 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 PCBP3P57721 371 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 CLRN1P58418 232 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 PCGF3Q3KNV8 242 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 COQ5Q5HYK3 327 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 ENTPD8Q5MY95 495 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 CARD17Q5XLA6 110 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 DLEU7Q6UYE1 221 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SLC35D2Q76EJ3 337 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 CCDC80Q76M96 950 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 LINC01356Q8N9X3 169 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 SNX33Q8WV41 574 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 C11orf40Q8WZ69 217 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 LZICQ8WZA0 190 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 RDH5Q92781 318 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 TMEM54Q969K7 222 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 MRPL24Q96A35 216 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 MDFIQ99750 246 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 ZNF385DQ9H6B1 395 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 CDH20Q9HBT6 801 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 B3GNT2Q9NY97 397 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 EIF3KQ9UBQ5 218 aaKnown RBP6.73□□□□□ -1.33
CD44-211ENST00000442151 ADAM21Q9UKJ8 722 aa6.73□□□□□ -1.33
CD44-211ENST00000442151 IGKV1D-42A0A075B6H8 117 aa6.72□□□□□ -1.33
CD44-211ENST00000442151 A0A096LNT2 108 aa6.72□□□□□ -1.33
CD44-211ENST00000442151 MCIDASD6RGH6 385 aa6.72□□□□□ -1.33
CD44-211ENST00000442151 NDUFAB1O14561 156 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms