RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 RPS4XP62701 263 aaKnown RBP16.32■□□□□ 0.2
SHH-204ENST00000441114 PPP1R8Q12972 351 aaKnown RBP16.32■□□□□ 0.2
SHH-204ENST00000441114 FHL1Q13642 323 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 ADAM5Q6NVV9 412 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 PAMR1Q6UXH9 720 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 SSX8Q7RTT4 187 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 PIAS4Q8N2W9 510 aaPredicted RBP16.32■□□□□ 0.2
SHH-204ENST00000441114 LRRC75AQ8NAA5 344 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 KBTBD8Q8NFY9 601 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 AKAP1Q92667 903 aaKnown RBP eCLIP16.32■□□□□ 0.2
SHH-204ENST00000441114 NEUROG1Q92886 237 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 FUZQ9BT04 418 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 TXNIPQ9H3M7 391 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 NELFAQ9H3P2 528 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 MAGIXQ9H6Y5 334 aa16.32■□□□□ 0.2
SHH-204ENST00000441114 CCM2LQ9NUG4 571 aaPredicted RBP16.32■□□□□ 0.2
SHH-204ENST00000441114 NOTCH2Q04721 2471 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 HEATR1Q9H583 2144 aaKnown RBP16.31■□□□□ 0.2
SHH-204ENST00000441114 UNC119BA6NIH7 251 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 TNFRSF11BO00300 401 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 ABCD4O14678 606 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 ATP5HO75947 161 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 RAF1P04049 648 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 QDPRP09417 244 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 RASSF2P50749 326 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 RPL27P61353 136 aaKnown RBP16.31■□□□□ 0.2
SHH-204ENST00000441114 ERVK-25P63136 954 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 FLOT2Q14254 428 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 ANKDD1AQ495B1 522 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 ARMC4Q5T2S8 1044 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 TMEM108Q6UXF1 575 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 ZNF813Q6ZN06 617 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 SPATA24Q86W54 205 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 NOXO1Q8NFA2 376 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 RSRC1Q96IZ7 334 aaKnown RBP16.31■□□□□ 0.2
SHH-204ENST00000441114 TMEM204Q9BSN7 226 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 IL20RAQ9UHF4 553 aa16.31■□□□□ 0.2
SHH-204ENST00000441114 MAGED1Q9Y5V3 778 aaPredicted RBP16.31■□□□□ 0.2
SHH-204ENST00000441114 RAI1Q7Z5J4 1906 aaPredicted RBP16.3■□□□□ 0.2
SHH-204ENST00000441114 B4GALT1P15291 398 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 CD40P25942 277 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 MAGEA2P43356 314 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 LIMS1P48059 325 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 SPOCK1Q08629 439 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 CD47Q08722 323 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 LRFN4Q6PJG9 635 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 HDDC2Q7Z4H3 204 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 ZER1Q7Z7L7 766 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 LILRB1Q8NHL6 650 aaPredicted RBP16.3■□□□□ 0.2
SHH-204ENST00000441114 MAGEE2Q8TD90 523 aaPredicted RBP16.3■□□□□ 0.2
SHH-204ENST00000441114 HDAC2Q92769 488 aaKnown RBP16.3■□□□□ 0.2
SHH-204ENST00000441114 MCHR2Q969V1 340 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 BOD1Q96IK1 185 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 TSPAN32Q96QS1 320 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 GPA33Q99795 319 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 FOXB1Q99853 325 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 KATNB1Q9BVA0 655 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 OBP2BQ9NPH6 170 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 POMPQ9Y244 141 aa16.3■□□□□ 0.2
SHH-204ENST00000441114 TACC2O95359 2948 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 ANKRD17O75179 2603 aaKnown RBP16.29■□□□□ 0.2
SHH-204ENST00000441114 AQP12BA6NM10 295 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 DHHO43323 396 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 PTP4A3O75365 173 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 KRT36O76013 467 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 NDUFB2O95178 105 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 ATE1O95260 518 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 RAP2AP10114 183 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 CD79AP11912 226 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 ZNF26P17031 533 aaPredicted RBP16.29■□□□□ 0.2
SHH-204ENST00000441114 PTAFRP25105 342 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 TAF11Q15544 211 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 SLC22A25Q6T423 547 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 AQP12AQ8IXF9 295 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 ADGRG5Q8IZF4 528 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 CANT1Q8WVQ1 401 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 HTRA1Q92743 480 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 POP5Q969H6 163 aaKnown RBP16.29■□□□□ 0.2
SHH-204ENST00000441114 RADILQ96JH8 1075 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 CHID1Q9BWS9 393 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 MRPL13Q9BYD1 178 aaKnown RBP16.29■□□□□ 0.2
SHH-204ENST00000441114 NDEL1Q9GZM8 345 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 STX18Q9P2W9 335 aaKnown RBP16.29■□□□□ 0.2
SHH-204ENST00000441114 POU2F3Q9UKI9 436 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 SIGLEC7Q9Y286 467 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 ADAM18Q9Y3Q7 739 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 LYVE1Q9Y5Y7 322 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 U3KQV3 271 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 DSCAMO60469 2012 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 AKAP6Q13023 2319 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 POLQO75417 2590 aa16.29■□□□□ 0.2
SHH-204ENST00000441114 ARPC4-TTLL3A0A0A6YYG9 625 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 DHRS12A0PJE2 317 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 HS3ST1O14792 307 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 ARHGEF9O43307 516 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 SLC2A10O95528 541 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 IGHMP01871 453 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 HOXB1P14653 301 aaPredicted RBP16.28■□□□□ 0.2
SHH-204ENST00000441114 IFNGR2P38484 337 aa16.28■□□□□ 0.2
SHH-204ENST00000441114 CBX1P83916 185 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms