RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 PHF21AQ96BD5 680 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 KCNJ15Q99712 375 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 VN1R1Q9GZP7 353 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 KCNK15Q9H427 330 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 CDCP1Q9H5V8 836 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 C14orf105Q9NVL8 296 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 KLK11Q9UBX7 282 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 SUSD2Q9UGT4 822 aa8.59□□□□□ -1.04
CUX1-206ENST00000437600 CEP295Q9C0D2 2601 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 LY6G6EA0A0G2JKS1 128 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 FITM1A5D6W6 292 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 OR7A10O76100 309 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 MPZL1O95297 269 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 OR2T7P0C7T2 308 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 FAM157BP0CG42 384 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 TMIGD3P0DMS9 266 aaPredicted RBP8.58□□□□□ -1.04
CUX1-206ENST00000437600 ARSBP15848 533 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 IL11P20809 199 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 GPR143P51810 404 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SPEM2Q0P670 501 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 ZNF74Q16587 644 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 RPL13AP3Q6NVV1 102 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 JAZF1Q86VZ6 243 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SIAH3Q8IW03 269 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 GPALPP1Q8IXQ4 340 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 ARL6IP6Q8N6S5 226 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 OR2T27Q8NH04 317 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 LGALS14Q8TCE9 139 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 RFT1Q96AA3 541 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SLC41A2Q96JW4 573 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SEMA4CQ9C0C4 833 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SLC22A11Q9NSA0 550 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 GRHPRQ9UBQ7 328 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 KCNN3Q9UGI6 736 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 ZNF337Q9Y3M9 751 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 PCDHGB7Q9Y5F8 929 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 U3KQA8 63 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 PHF3Q92576 2039 aaKnown RBP8.58□□□□□ -1.04
CUX1-206ENST00000437600 SPENQ96T58 3664 aaKnown RBP8.58□□□□□ -1.04
CUX1-206ENST00000437600 A0A0A6YYJ9 748 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SC5DO75845 299 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 IGLV3-21P80748 117 aaPredicted RBP8.58□□□□□ -1.04
CUX1-206ENST00000437600 SKP2Q13309 424 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 NTRK2Q16620 822 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 LINC01590Q5TEZ4 76 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 PWWP2BQ6NUJ5 590 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 MZT2BQ6NZ67 158 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 DPY19L2P2Q6ZN68 376 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 PXKQ7Z7A4 578 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 C9orf40Q8IXQ3 194 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 RGP1Q92546 391 aaPredicted RBP8.58□□□□□ -1.04
CUX1-206ENST00000437600 C8orf44Q96CB5 159 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 SMIM19Q96E16 107 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 RNF170Q96K19 258 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 DDOQ99489 341 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 GFI1Q99684 422 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 MMP25Q9NPA2 562 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 PRDM9Q9NQV7 894 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 ANKRD10Q9NXR5 420 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 COQ3Q9NZJ6 369 aa8.58□□□□□ -1.04
CUX1-206ENST00000437600 A0A1B0GX78 115 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 FLRT2O43155 660 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 TOXO94900 526 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 AKR7A3O95154 331 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 HLA-DOBP13765 273 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 CXCL3P19876 107 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 CFL1P23528 166 aaKnown RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 MELKQ14680 651 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 INPP5JQ15735 1006 aaPredicted RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 ZSWIM7Q19AV6 140 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 SLC36A2Q495M3 483 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 DMRTC1Q5HYR2 192 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 TMEM255AQ5JRV8 349 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 FAM199XQ6PEV8 388 aaPredicted RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 LRRN1Q6UXK5 716 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 ATG4DQ86TL0 474 aaPredicted RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 LRRC28Q86X40 367 aaPredicted RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 CMTM4Q8IZR5 234 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 PCNPQ8WW12 178 aaKnown RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 HOXB13Q92826 284 aaPredicted RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 NARFLQ9H6Q4 476 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 FANCFQ9NPI8 374 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 FRRS1LQ9P0K9 344 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 TEKT2Q9UIF3 430 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 TEX51A0A1B0GUA7 166 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 MEIS3P1A6NDR6 274 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 PCP4L1A6NKN8 68 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 EFCAB7A8K855 629 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 DDAH2O95865 285 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 NPR2P20594 1047 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 RBM34P42696 430 aaKnown RBP8.57□□□□□ -1.04
CUX1-206ENST00000437600 EFR3AQ14156 821 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 FCN2Q15485 313 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 HSD17B12Q53GQ0 312 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 MESTQ5EB52 335 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 WBP2NLQ6ICG8 309 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 LCN10Q6JVE6 187 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 OR14A16Q8NHC5 309 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 STT3BQ8TCJ2 826 aa8.57□□□□□ -1.04
CUX1-206ENST00000437600 ZNF721Q8TF20 911 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms