RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TRIB1Q96RU8 372 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CXCL16Q9H2A7 254 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 PRELID3BQ9Y3B1 194 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CRYZL1O95825 349 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CPT2P23786 658 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CST5P28325 142 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CRMP1Q14194 572 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 MEP1BQ16820 701 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CCSMST1Q4G0I0 132 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 C5orf46Q6UWT4 87 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 PFN4Q8NHR9 129 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 TUBB1Q9H4B7 451 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 HEYLQ9NQ87 328 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-206ENST00000429895 MYH7P12883 1935 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 TCRBV3S1A0A5B6 114 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 ADAM23O75077 832 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 SLC1A3P43003 542 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 NDUFA6P56556 154 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 DEFB123Q8N688 67 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 KCNG3Q8TAE7 436 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 CMTM2Q8TAZ6 248 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 PDCD1LG2Q9BQ51 273 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 SEMA4GQ9NTN9 838 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 H0YIV9 168 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 I6L893 689 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-206ENST00000429895 OIP5O43482 229 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 OR2T7P0C7T2 308 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 IRS1P35568 1242 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 ZNF93P35789 620 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-206ENST00000429895 EIF1P41567 113 aaKnown RBP14.2□□□□□ -0.14
PTPRF-206ENST00000429895 KIR2DL3P43628 341 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 ACSM1Q08AH1 577 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 MYBPHQ13203 477 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 EXT1Q16394 746 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 SPPL3Q8TCT6 385 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 SLC39A13Q96H72 371 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 TCHHQ07283 1943 aa14.2□□□□□ -0.14
PTPRF-206ENST00000429895 MYO10Q9HD67 2058 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 TATDN3Q17R31 274 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 SETD1AO15047 1707 aaKnown RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 ARFGEF2Q9Y6D5 1785 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 SLC35E2P0CK97 266 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 FOLR1P15328 257 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 PPT1P50897 306 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 RBMS2Q15434 407 aaKnown RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 ALKAL2Q6UX46 152 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 OR1N1Q8NGS0 311 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 TIMD4Q96H15 378 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GMPR2Q9P2T1 348 aaKnown RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 T-ENOLP0DO92 83 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GABRB3P28472 473 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GDNFP39905 211 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GLYR1Q49A26 553 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 WDR5BQ86VZ2 330 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 SLC22A24Q8N4F4 322 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 NIPAL2Q9H841 368 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 MTCH1Q9NZJ7 389 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 COA3Q9Y2R0 106 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 MMACHCQ9Y4U1 282 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 LGALS8O00214 317 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 CITO14578 2027 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 SNAPINO95295 136 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 IGFBP1P08833 259 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 PRKACAP17612 351 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 LIM2P55344 173 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GPLD1P80108 840 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 FAPQ12884 760 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 OR8G1Q15617 311 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 NAV1Q8NEY1 1877 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 OR52A1Q9UKL2 312 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 ARHGAP33O14559 1287 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 HNRNPFP52597 415 aaKnown RBP14.19□□□□□ -0.14
PTPRF-206ENST00000429895 HBG1P69891 147 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 HBG2P69892 147 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 SHHQ15465 462 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GGTA1PQ4G0N0 100 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 ZNF454Q8N9F8 522 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 EMC6Q9BV81 110 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 GPR173Q9NS66 373 aa14.19□□□□□ -0.14
PTPRF-206ENST00000429895 K7ESM1 405 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 M0R1B8 84 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 TRAF3IP2O43734 574 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-206ENST00000429895 YIF1AO95070 293 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 ALKBH1Q13686 389 aaKnown RBP14.18□□□□□ -0.14
PTPRF-206ENST00000429895 C3orf49Q96BT1 292 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 BARHL1Q9BZE3 327 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 CTNSO60931 367 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 CD1CP29017 333 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 Q499Y3 187 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 C1orf140Q5VVS0 124 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 LAX1Q8IWV1 398 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 EGLN1Q9GZT9 426 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 AADACP22760 399 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 OR8G2PQ6IF36 304 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 DPY19L2P2Q6ZN68 376 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 WFDC8Q8IUA0 241 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 PIPP12273 146 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-206ENST00000429895 CSNK1G2P78368 415 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 DEFB109BQ30KR1 87 aa14.18□□□□□ -0.14
PTPRF-206ENST00000429895 GLIPR1L1Q6UWM5 242 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms