RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 CRYBG1Q9Y4K1 1723 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 KIR2DS1A0A191URI9 304 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SERTM2A0A1B0GWG4 89 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MEIS3P1A6NDR6 274 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 GALR2O43603 387 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CRYAAP02489 173 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 HMGN2P05204 90 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 KIR2DS4P43632 304 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR10A3P58181 314 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PRDX1Q06830 199 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 KIR2DS1Q14954 304 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM78AQ5JUQ0 283 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF468Q5VIY5 522 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 NKAIN2Q5VXU1 208 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR7E24Q6IFN5 339 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM65Q6PI78 240 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CCBE1Q6UXH8 406 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ADAMTSL4Q6UY14 1074 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CAMKMTQ7Z624 323 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF573Q86YE8 665 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM185AQ8N0U4 392 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM130Q8N3G9 435 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 DEFB123Q8N688 67 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR9Q2Q8NGE9 314 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 KCTD12Q96CX2 325 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MTCH1Q9NZJ7 389 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CNOT2Q9NZN8 540 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 DNAJC13O75165 2243 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 KCPQ6ZWJ8 1503 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MDC1Q14676 2089 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CDK2AP1O14519 115 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 AGPAT2O15120 278 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ADRA1AP35348 466 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ACSM1Q08AH1 577 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 LRRC10Q5BKY1 277 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF813Q6ZN06 617 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 THNSL2Q86YJ6 484 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TDHQ8IZJ6 230 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM72CH0Y354 149 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PHF1O43189 567 aaPredicted RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 HCRTO43612 131 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 NAGAP17050 411 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PSMB10P40306 273 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PPP1CAP62136 330 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SH3BP2P78314 561 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM72AQ5TYM5 149 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 PM20D1Q6GTS8 502 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM72DQ6L9T8 149 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 TFAP2EQ6VUC0 442 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 FAM72BQ86X60 149 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 CPNE8Q86YQ8 564 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 NAXDQ8IW45 347 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR2L13Q8N349 312 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ABHD4Q8TB40 342 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SMIM3Q9BZL3 60 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 OR52D1Q9H346 318 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 IKZF5Q9H5V7 419 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 BCO1Q9HAY6 547 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 SALL4Q9UJQ4 1053 aa6.35□□□□□ -1.39
SCN1A-204ENST00000423058 MRPS28Q9Y2Q9 187 aaKnown RBP6.35□□□□□ -1.39
SCN1A-204ENST00000423058 ANKRD61A6NGH8 418 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 SERINC4A6NH21 518 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ACOT8O14734 319 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ALOX12BO75342 701 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 FBXO45P0C2W1 286 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 GABRA5P31644 462 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF93P35789 620 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 KCNJ10P78508 379 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 OR5I1Q13606 314 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM211Q6ICI0 200 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 C17orf99Q6UX52 265 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 SLC30A3Q99726 388 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ATP5SQ99766 215 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HRH4Q9H3N8 390 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 RAB22AQ9UL26 194 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 TMEM82A0PJX8 343 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ZNF865P0CJ78 1059 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ELK1P19419 428 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HTR2CP28335 458 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HLCSP50747 726 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 SMAD4Q13485 552 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ARHGAP11BQ3KRB8 267 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 APOOLQ6UXV4 268 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 DPY19L2P2Q6ZN68 376 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 PIWIL3Q7Z3Z3 882 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 OR2AE1Q8NHA4 323 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 RLN3Q8WXF3 142 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 OR52A1Q9UKL2 312 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 I6L893 689 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 AQP7O14520 342 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 HPGDSO60760 199 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 TM4SF4P48230 202 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 SNRPD2P62316 118 aaKnown RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 CEACAM7Q14002 265 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 LHFPL2Q6ZUX7 228 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 LRRC56Q8IYG6 542 aaPredicted RBP6.34□□□□□ -1.39
SCN1A-204ENST00000423058 FAM58AQ8N1B3 248 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 C3orf58Q8NDZ4 430 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 NETO1Q8TDF5 533 aa6.34□□□□□ -1.39
SCN1A-204ENST00000423058 ELSPBP1Q96BH3 223 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms