RNA–Protein interactions for RNA: ENST00000417088.2

RPS28-201, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 334 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-201ENST00000417088 RINLQ6ZS11 566 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 PIWIL3Q7Z3Z3 882 aaKnown RBP12.72□□□□□ -0.37
RPS28-201ENST00000417088 ZNF584Q8IVC4 421 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 SKA3Q8IX90 412 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 SMYD1Q8NB12 490 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 OR5J2Q8NH18 312 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 CLDND2Q8NHS1 167 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 RDH5Q92781 318 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 TMEM54Q969K7 222 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 MCHR1Q99705 422 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 CPPED1Q9BRF8 314 aaPredicted RBP12.72□□□□□ -0.37
RPS28-201ENST00000417088 CCDC28BQ9BUN5 200 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 RACGAP1Q9H0H5 632 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 SLCO1B3Q9NPD5 702 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.72□□□□□ -0.37
RPS28-201ENST00000417088 FZR1Q9UM11 496 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 CORO2BQ9UQ03 480 aa12.72□□□□□ -0.37
RPS28-201ENST00000417088 FAM157AC9JC47 383 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 M0R3H8 397 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 WNT9BO14905 357 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 FMO6PO60774 539 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 SERPINA5P05154 406 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 PCMT1P22061 227 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 ACHEP22303 614 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 PCBP3P57721 371 aaKnown RBP12.71□□□□□ -0.37
RPS28-201ENST00000417088 GALK2Q01415 458 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 NPTX1Q15818 432 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 DUSP7Q16829 419 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 AGKQ53H12 422 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 ZNF613Q6PF04 617 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 DLEU7Q6UYE1 221 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 SLC35D2Q76EJ3 337 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 GLCCI1Q86VQ1 547 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 PTOV1Q86YD1 416 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 GPR32P1Q8NGA4 272 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 OR6X1Q8NH79 312 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 YIPF5Q969M3 257 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 ARHGDIGQ99819 225 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 NARFLQ9H6Q4 476 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 ZNF275Q9NSD4 429 aaPredicted RBP12.71□□□□□ -0.37
RPS28-201ENST00000417088 TAS2R5Q9NYW4 299 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 GLTPQ9NZD2 209 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 DUSP13Q9UII6 198 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 METRNQ9UJH8 293 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 FBXL3Q9UKT7 428 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 ANGPT4Q9Y264 503 aa12.71□□□□□ -0.37
RPS28-201ENST00000417088 CHP2O43745 196 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 ZNF500O60304 480 aaPredicted RBP12.7□□□□□ -0.38
RPS28-201ENST00000417088 OR6A2O95222 327 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 LYPD3O95274 346 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 THY1P04216 161 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 ATP4BP51164 291 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 TMEM33P57088 247 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 ZP4Q12836 540 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 ZNF74Q16587 644 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 RUNDC3AQ59EK9 446 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 REP15Q6BDI9 236 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 LRFN4Q6PJG9 635 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 DEF8Q6ZN54 512 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 MEX3DQ86XN8 651 aaKnown RBP12.7□□□□□ -0.38
RPS28-201ENST00000417088 SLC22A24Q8N4F4 322 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 OR6T1Q8NGN1 323 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 LPAR2Q9HBW0 351 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 SLC7A8Q9UHI5 535 aa12.7□□□□□ -0.38
RPS28-201ENST00000417088 A0A1W2PPW3 197 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 CPSF4LA6NMK7 179 aaKnown RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 M0QX08 132 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 DHHO43323 396 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 ERLIN1O75477 346 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 RP2O75695 350 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 NCR1O76036 304 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 VENTXO95231 258 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 CH25HO95992 272 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 TFP02787 698 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 OPN1SWP03999 348 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 OR8G3PP0DMU2 310 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 SAGP10523 405 aaPredicted RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 NAT2P11245 290 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 LSP1P33241 339 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 MRPS11P82912 194 aaKnown RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 MELKQ14680 651 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 ENTPD8Q5MY95 495 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 RBM45Q8IUH3 476 aaKnown RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 PAQR4Q8N4S7 273 aaPredicted RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 LRRC17Q8N6Y2 441 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 C11orf65Q8NCR3 313 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 OR4D11Q8NGI4 311 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 LRRC8CQ8TDW0 803 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 ZNF566Q969W8 418 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 TMEM186Q96B77 213 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 SH3GL3Q99963 347 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 OCEL1Q9H607 264 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 ZNF385DQ9H6B1 395 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 METTL17Q9H7H0 456 aaPredicted RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 TMEM38BQ9NVV0 291 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 HIF1ANQ9NWT6 349 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 TREM2Q9NZC2 230 aa12.69□□□□□ -0.38
RPS28-201ENST00000417088 ZNF346Q9UL40 294 aaKnown RBP12.69□□□□□ -0.38
RPS28-201ENST00000417088 PPIHO43447 177 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms