RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 NOVA1P51513 510 aaKnown RBP11.97□□□□□ -0.49
COL6A3-206ENST00000409809 CLDN10P78369 228 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 FAM74A3Q4VXF1 159 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 SHEQ5VZ18 495 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 RGMBQ6NW40 437 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 ZNF100Q8IYN0 542 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 OR4N2Q8NGD1 307 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 PTDSS2Q9BVG9 487 aa11.97□□□□□ -0.49
COL6A3-206ENST00000409809 M0R1X1 148 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 OR8U8P0C7N1 319 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 STAG3L3P0CL85 134 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 LMO2P25791 158 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 PRR27Q6MZM9 219 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 DPY19L2P2Q6ZN68 376 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 OTOP2Q7RTS6 562 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM174Q8WUU8 243 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 FAM3CQ92520 227 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 TAAR9Q96RI9 348 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 RHOFQ9HBH0 211 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 ASIC5Q9NY37 505 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 AJAP1Q9UKB5 411 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-206ENST00000409809 H3BSH0 61 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 CSN1S1P47710 185 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 MEF2AQ02078 507 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-206ENST00000409809 DOC2BQ14184 412 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 ARSJQ5FYB0 599 aaPredicted RBP11.96□□□□□ -0.49
COL6A3-206ENST00000409809 LETMD1Q6P1Q0 360 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 SDR9C7Q8NEX9 313 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 ANAPC16Q96DE5 110 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 SLC23A2Q9UGH3 650 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 RHBDD3Q9Y3P4 386 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 ARL2-SNX15V9GYD0 113 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 TMEM269A0A1B0GVZ9 245 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 FKBP2P26885 142 aaKnown RBP11.96□□□□□ -0.49
COL6A3-206ENST00000409809 GATMP50440 423 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 RAC1P63000 192 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 SDHAF4Q5VUM1 108 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 REEP6Q96HR9 211 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 WDFY2Q96P53 400 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 APEHP13798 732 aaKnown RBP11.96□□□□□ -0.49
COL6A3-206ENST00000409809 RPS26P62854 115 aaKnown RBP11.96□□□□□ -0.49
COL6A3-206ENST00000409809 FABP9Q0Z7S8 132 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 PTPRCAPQ14761 206 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 DHRS11Q6UWP2 260 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 OR5AP2Q8NGF4 316 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 DMRT3Q9NQL9 472 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 KCNK6Q9Y257 313 aa11.96□□□□□ -0.49
COL6A3-206ENST00000409809 TRAPPC6AO75865 159 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 ADH5P11766 374 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 SELPP16109 830 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 GDI1P31150 447 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 CSF2RBP32927 897 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 GAB1Q13480 694 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 RBMXL3Q8N7X1 1067 aaKnown RBP11.96□□□□□ -0.5
COL6A3-206ENST00000409809 ANKLE1Q8NAG6 615 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 UBTD2Q8WUN7 234 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 NTNG2Q96CW9 530 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 MS4A10Q96PG2 267 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 LIN7CQ9NUP9 197 aaKnown RBP11.96□□□□□ -0.5
COL6A3-206ENST00000409809 B4GALT6Q9UBX8 382 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 IER3IP1Q9Y5U9 82 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 GLOD5A6NK44 160 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 C4orf47A7E2U8 309 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 A8MUA0 341 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 RNASEK-C17orf49H0YIS7 233 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 CSNK1A1P48729 337 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 ELAVL3Q14576 367 aaKnown RBP11.96□□□□□ -0.5
COL6A3-206ENST00000409809 PDZD11Q5EBL8 140 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 EMC4Q5J8M3 183 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 LSRQ86X29 649 aaPredicted RBP11.96□□□□□ -0.5
COL6A3-206ENST00000409809 MISPQ8IVT2 679 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 OR52I1Q8NGK6 324 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 INTS12Q96CB8 462 aaKnown RBP11.96□□□□□ -0.5
COL6A3-206ENST00000409809 UBQLN4Q9NRR5 601 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 OSGIN2Q9Y236 505 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 SLC45A1Q9Y2W3 748 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 CCDC187A0A096LP49 1063 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 CLDN34H7C241 214 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 HSBP1O75506 76 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 GABRR1P24046 479 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 RPL12P30050 165 aaKnown RBP11.96□□□□□ -0.5
COL6A3-206ENST00000409809 GPR160Q9UJ42 338 aa11.96□□□□□ -0.5
COL6A3-206ENST00000409809 ZCWPW2A0A1B0GU75 182 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 SDC1P18827 310 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 MARVELD3Q96A59 401 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 OR10C1Q96KK4 312 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 DOK1Q99704 481 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 TEX101Q9BY14 249 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 NOX4Q9NPH5 578 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 GDF2Q9UK05 429 aaPredicted RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 MTCL1Q9Y4B5 1905 aaKnown RBP11.95□□□□□ -0.5
COL6A3-206ENST00000409809 A6NLC8 198 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 DAPP51397 102 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ISL1P61371 349 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 IL20RBQ6UXL0 311 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF738Q8NE65 137 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 CLEC4CQ8WTT0 213 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 BLNKQ8WV28 456 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 PADI1Q9ULC6 663 aa11.95□□□□□ -0.5
COL6A3-206ENST00000409809 ZNF443Q9Y2A4 671 aaPredicted RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms