RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 AURKCQ9UQB9 309 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 POMPQ9Y244 141 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 RNF115Q9Y4L5 304 aa19.01■□□□□ 0.63
CLN3-207ENST00000395653 ARPC4-TTLL3A0A0A6YYG9 625 aa19■□□□□ 0.63
CLN3-207ENST00000395653 DPRXA6NFQ7 191 aa19■□□□□ 0.63
CLN3-207ENST00000395653 CD3EP07766 207 aa19■□□□□ 0.63
CLN3-207ENST00000395653 HOXB6P17509 224 aaKnown RBP19■□□□□ 0.63
CLN3-207ENST00000395653 HMGA2P52926 109 aa19■□□□□ 0.63
CLN3-207ENST00000395653 UBE2NP61088 152 aaKnown RBP19■□□□□ 0.63
CLN3-207ENST00000395653 BSPH1Q075Z2 132 aa19■□□□□ 0.63
CLN3-207ENST00000395653 KLHL17Q6TDP4 642 aa19■□□□□ 0.63
CLN3-207ENST00000395653 PAMR1Q6UXH9 720 aa19■□□□□ 0.63
CLN3-207ENST00000395653 ZNF704Q6ZNC4 412 aaPredicted RBP19■□□□□ 0.63
CLN3-207ENST00000395653 ZNF627Q7L945 461 aa19■□□□□ 0.63
CLN3-207ENST00000395653 NINJ1Q92982 152 aa19■□□□□ 0.63
CLN3-207ENST00000395653 MRPL13Q9BYD1 178 aaKnown RBP19■□□□□ 0.63
CLN3-207ENST00000395653 NDEL1Q9GZM8 345 aa19■□□□□ 0.63
CLN3-207ENST00000395653 LIME1Q9H400 295 aa19■□□□□ 0.63
CLN3-207ENST00000395653 SLC7A8Q9UHI5 535 aa19■□□□□ 0.63
CLN3-207ENST00000395653 ST6GALNAC2Q9UJ37 374 aa19■□□□□ 0.63
CLN3-207ENST00000395653 LYVE1Q9Y5Y7 322 aa19■□□□□ 0.63
CLN3-207ENST00000395653 ALPK2Q86TB3 2170 aa19■□□□□ 0.63
CLN3-207ENST00000395653 A0A096LPE4 126 aa19■□□□□ 0.63
CLN3-207ENST00000395653 A0A1W2PPZ6 126 aa19■□□□□ 0.63
CLN3-207ENST00000395653 ACADSP16219 412 aa19■□□□□ 0.63
CLN3-207ENST00000395653 IFNGR2P38484 337 aa19■□□□□ 0.63
CLN3-207ENST00000395653 ZNF83P51522 516 aa19■□□□□ 0.63
CLN3-207ENST00000395653 CLRN1P58418 232 aa19■□□□□ 0.63
CLN3-207ENST00000395653 CTXN1P60606 82 aa19■□□□□ 0.63
CLN3-207ENST00000395653 HIST3H3Q16695 136 aa19■□□□□ 0.63
CLN3-207ENST00000395653 TMEM108Q6UXF1 575 aa19■□□□□ 0.63
CLN3-207ENST00000395653 ADGRG5Q8IZF4 528 aa19■□□□□ 0.63
CLN3-207ENST00000395653 NOXO1Q8NFA2 376 aa19■□□□□ 0.63
CLN3-207ENST00000395653 MMADHCQ9H3L0 296 aaPredicted RBP19■□□□□ 0.63
CLN3-207ENST00000395653 SIGLEC7Q9Y286 467 aa19■□□□□ 0.63
CLN3-207ENST00000395653 POFUT2Q9Y2G5 429 aa19■□□□□ 0.63
CLN3-207ENST00000395653 DHRS12A0PJE2 317 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 OR10H3O60404 316 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 PTP4A3O75365 173 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 TRMUO75648 421 aaKnown RBP18.99■□□□□ 0.63
CLN3-207ENST00000395653 PTAFRP25105 342 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 RPL27P61353 136 aaKnown RBP18.99■□□□□ 0.63
CLN3-207ENST00000395653 RUNX1T1Q06455 604 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 FAM205BPQ63HN1 556 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 ZER1Q7Z7L7 766 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 IGFN1Q86VF2 1251 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 CCDC36Q8IYA8 594 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 RSRC1Q96IZ7 334 aaKnown RBP18.99■□□□□ 0.63
CLN3-207ENST00000395653 LRMDAQ9H2I8 198 aa18.99■□□□□ 0.63
CLN3-207ENST00000395653 MOV10Q9HCE1 1003 aaKnown RBP18.99■□□□□ 0.63
CLN3-207ENST00000395653 ZNF346Q9UL40 294 aaKnown RBP18.99■□□□□ 0.63
CLN3-207ENST00000395653 TNFRSF11BO00300 401 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 NDUFB2O95178 105 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 PLAUP00749 431 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 NR2C1P13056 603 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 ZNF26P17031 533 aaPredicted RBP18.98■□□□□ 0.63
CLN3-207ENST00000395653 TOP3AQ13472 1001 aaPredicted RBP18.98■□□□□ 0.63
CLN3-207ENST00000395653 OR2T5Q6IEZ7 315 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 ADAM5Q6NVV9 412 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 LRFN4Q6PJG9 635 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 LINC00471Q8N535 108 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 OR2T29Q8NH02 315 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 CANT1Q8WVQ1 401 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 GPA33Q99795 319 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 FOXB1Q99853 325 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 KATNB1Q9BVA0 655 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 MGAT4BQ9UQ53 548 aa18.98■□□□□ 0.63
CLN3-207ENST00000395653 AKAP6Q13023 2319 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 UNC119BA6NIH7 251 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 DHHO43323 396 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 RAF1P04049 648 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 CD14P08571 375 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 QDPRP09417 244 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 FPR3P25089 353 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 CD40P25942 277 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 RPL4P36578 427 aaKnown RBP18.97■□□□□ 0.63
CLN3-207ENST00000395653 ZNF133P52736 654 aaPredicted RBP18.97■□□□□ 0.63
CLN3-207ENST00000395653 C1orf94Q6P1W5 598 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 ZNF813Q6ZN06 617 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 SPATA24Q86W54 205 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 SYT14Q8NB59 555 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 OR4C15Q8NGM1 316 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 HDAC2Q92769 488 aaKnown RBP18.97■□□□□ 0.63
CLN3-207ENST00000395653 MCHR2Q969V1 340 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 RADILQ96JH8 1075 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 TSPAN32Q96QS1 320 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 GPX7Q96SL4 187 aaPredicted RBP18.97■□□□□ 0.63
CLN3-207ENST00000395653 KCNK17Q96T54 332 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 ALG12Q9BV10 488 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 CHID1Q9BWS9 393 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 C1QTNF6Q9BXI9 259 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 UBTD1Q9HAC8 227 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 SMURF2Q9HAU4 748 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 PLEKHA6Q9Y2H5 1048 aa18.97■□□□□ 0.63
CLN3-207ENST00000395653 TCRBV3S1A0A5B6 114 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 A6NIZ1 184 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 M0R1B8 84 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 ABCD4O14678 606 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 SEC14L2O76054 403 aa18.96■□□□□ 0.63
CLN3-207ENST00000395653 DNASE1P24855 282 aa18.96■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms