RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 SLC34A2O95436 690 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 STATHP02808 62 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 HEXAP06865 529 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 SBK2P0C263 348 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 DPP4P27487 766 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 DCTDP32321 178 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 TRHRP34981 398 aaPredicted RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 LSSP48449 732 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 P2RX1P51575 399 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 STXBP1P61764 594 aaKnown RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 SNRPNP63162 240 aaKnown RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 EEF1A1P68104 462 aaKnown RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 RBMS2Q15434 407 aaKnown RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 MANEAQ5SRI9 462 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 AVPI1Q5T686 147 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 EEF1A1P5Q5VTE0 462 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 DCAF12L2Q5VW00 463 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 HMGN2P46Q86SG4 172 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 ELP5Q8TE02 316 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 C15orf40Q8WUR7 153 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 LCN9Q8WX39 176 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 RSC1A1Q92681 617 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 ZNF285Q96NJ3 590 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 PRAP1Q96NZ9 151 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 MS4A4EQ96PG1 132 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 ELF4Q99607 663 aaPredicted RBP10.15□□□□□ -0.78
CUX1-204ENST00000393824 PTDSS2Q9BVG9 487 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 FAM117AQ9C073 453 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 NRIP3Q9NQ35 241 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 KLHL28Q9NXS3 571 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 KMT2EQ8IZD2 1858 aa10.15□□□□□ -0.78
CUX1-204ENST00000393824 A0A1W2PPK0 400 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 CDHR4A6H8M9 788 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 LMO7DNF2Z398 122 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 WRBO00258 174 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 CDC42EP2O14613 210 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 GOSR2O14653 212 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 FMO6PO60774 539 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 CRYBA1P05813 215 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 ZGLP1P0C6A0 271 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 AGTR1P30556 359 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 PYCR1P32322 319 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 HHEXQ03014 270 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 GUCA2BQ16661 112 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 HLA-BQ31612 363 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 ANKRD39Q53RE8 183 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 FAM74A1Q5RGS3 127 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 C18orf63Q68DL7 685 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 FAAP20Q6NZ36 180 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 CBLN2Q8IUK8 224 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 SKA3Q8IX90 412 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 ARL14Q8N4G2 192 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 OR5J2Q8NH18 312 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 OR10G6Q8NH81 332 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 PHYHIPQ92561 330 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 S100A16Q96FQ6 103 aaKnown RBP10.15□□□□□ -0.79
CUX1-204ENST00000393824 DERL3Q96Q80 235 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 HCAR1Q9BXC0 346 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 OR51M1Q9H341 326 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 MED20Q9H944 212 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 ANKRD10Q9NXR5 420 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 C5AR2Q9P296 337 aa10.15□□□□□ -0.79
CUX1-204ENST00000393824 CARHSP1Q9Y2V2 147 aaKnown RBP10.15□□□□□ -0.79
CUX1-204ENST00000393824 A0A0A6YYD5 115 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 MEX3AA1L020 520 aaKnown RBP10.14□□□□□ -0.79
CUX1-204ENST00000393824 OR6C68A6NDL8 312 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 BHLHE40O14503 412 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 CLEC3AO75596 197 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 RPN2P04844 631 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 CD1AP06126 327 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 RAB40ALP0C0E4 278 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 ADCYAP1P18509 176 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 ACHEP22303 614 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 HNRNPKP61978 463 aaKnown RBP eCLIP10.14□□□□□ -0.791e-6■■■■□ 24.1
CUX1-204ENST00000393824 RPS11P62280 158 aaKnown RBP eCLIP10.14□□□□□ -0.796e-6■■■■■ 44.3
CUX1-204ENST00000393824 SORDQ00796 357 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 CBFBQ13951 182 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 ZNF345Q14585 488 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 ELOCQ15369 112 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 TMEM35AQ53FP2 167 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 PAN3Q58A45 887 aaKnown RBP10.14□□□□□ -0.79
CUX1-204ENST00000393824 PEAR1Q5VY43 1037 aaPredicted RBP10.14□□□□□ -0.79
CUX1-204ENST00000393824 OR4C11Q6IEV9 310 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 UNQ9370/PRO34162Q6UXP9 181 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 MUC20Q8N307 709 aaPredicted RBP10.14□□□□□ -0.79
CUX1-204ENST00000393824 KCNRGQ8N5I3 272 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 OR2L8Q8NGY9 312 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 FAM174AQ8TBP5 190 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 RAB40AQ8WXH6 277 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 SLC25A28Q96A46 364 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 SMIM19Q96E16 107 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 MACROD1Q9BQ69 325 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 MRI1Q9BV20 369 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 SLC38A1Q9H2H9 487 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 ADGRL4Q9HBW9 690 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 CAPN10Q9HC96 672 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 ZFP57Q9NU63 452 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 HAO2Q9NYQ3 351 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 FOXJ3Q9UPW0 622 aa10.14□□□□□ -0.79
CUX1-204ENST00000393824 GPR55Q9Y2T6 319 aaPredicted RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms