RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 TNFRSF1BP20333 461 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 NR4A1P22736 598 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 PCGF2P35227 344 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 CSNK1A1P48729 337 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 GZMMP51124 257 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 FAM120AOSQ5T036 256 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 FAM166AQ6J272 317 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 SLC35D2Q76EJ3 337 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 SYT3Q9BQG1 590 aa14.3□□□□□ -0.12
PTPRK-208ENST00000392449 SHOX2O60902 331 aaPredicted RBP14.29□□□□□ -0.12
PTPRK-208ENST00000392449 MT-ATP6P00846 226 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 C8BP07358 591 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 ZNF35P13682 527 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 ZNF23P17027 643 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 TCN1P20061 433 aaPredicted RBP14.29□□□□□ -0.12
PTPRK-208ENST00000392449 RAB1AP62820 205 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 RAB39AQ14964 217 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 TRIP10Q15642 601 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 RABL3Q5HYI8 236 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 TTC33Q6PID6 262 aaPredicted RBP14.29□□□□□ -0.12
PTPRK-208ENST00000392449 ZNF627Q7L945 461 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 LRP11Q86VZ4 500 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 ZNF584Q8IVC4 421 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 SKA3Q8IX90 412 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 CCDC36Q8IYA8 594 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 SNX18Q96RF0 628 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 MYOZ1Q9NP98 299 aaPredicted RBP14.29□□□□□ -0.12
PTPRK-208ENST00000392449 MYEF2Q9P2K5 600 aaKnown RBP14.29□□□□□ -0.12
PTPRK-208ENST00000392449 KCNS2Q9ULS6 477 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 TRIM33Q9UPN9 1127 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 CMAHPQ9Y471 501 aa14.29□□□□□ -0.12
PTPRK-208ENST00000392449 TRAPPC13A5PLN9 417 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 RNF13O43567 381 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 OR6A2O95222 327 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 TGFAP01135 160 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 ALDH3B1P43353 468 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 MAD2L1BPQ15013 274 aaPredicted RBP14.28□□□□□ -0.12
PTPRK-208ENST00000392449 LRFN4Q6PJG9 635 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 PATL1Q86TB9 770 aaKnown RBP14.28□□□□□ -0.12
PTPRK-208ENST00000392449 STON2Q8WXE9 905 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 TMEM54Q969K7 222 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 MRPL24Q96A35 216 aaKnown RBP14.28□□□□□ -0.12
PTPRK-208ENST00000392449 SH3GL3Q99963 347 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 PRSS27Q9BQR3 290 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 EVA1AQ9H8M9 152 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 MEPEQ9NQ76 525 aaPredicted RBP14.28□□□□□ -0.12
PTPRK-208ENST00000392449 NANSQ9NR45 359 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 GLTPQ9NZD2 209 aa14.28□□□□□ -0.12
PTPRK-208ENST00000392449 LILRA1O75019 489 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 RAB36O95755 333 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 UMPSP11172 480 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 SRD5A1P18405 259 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 GIFP27352 417 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 SEC24CP53992 1094 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 RUNX1T1Q06455 604 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 VMACQ2NL98 169 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 TRMT5Q32P41 509 aaKnown RBP14.27□□□□□ -0.12
PTPRK-208ENST00000392449 KRTAP24-1Q3LI83 254 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 NANOGP8Q6NSW7 305 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 HDXQ7Z353 690 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 IL17RDQ8NFM7 739 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 OR6X1Q8NH79 312 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 PFN4Q8NHR9 129 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 SLC26A7Q8TE54 656 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 NEU4Q8WWR8 484 aaPredicted RBP14.27□□□□□ -0.12
PTPRK-208ENST00000392449 TMEM158Q8WZ71 300 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 ZNF426Q9BUY5 554 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 TMEM120AQ9BXJ8 343 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 NANOGQ9H9S0 305 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 LPAR3Q9UBY5 353 aa14.27□□□□□ -0.12
PTPRK-208ENST00000392449 VSTM5A8MXK1 200 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 FXYD1O00168 92 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 SASH3O75995 380 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 ASAH2BP0C7U1 165 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 CCL2P13500 99 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 MYBPC1Q00872 1141 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 CCNIQ14094 377 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 GKAP1Q5VSY0 366 aaPredicted RBP14.26□□□□□ -0.13
PTPRK-208ENST00000392449 CARM1Q86X55 608 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 NKAIN4Q8IVV8 208 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 ZNF786Q8N393 782 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 SLC22A24Q8N4F4 322 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 PAQR4Q8N4S7 273 aaPredicted RBP14.26□□□□□ -0.13
PTPRK-208ENST00000392449 UBASH3BQ8TF42 649 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 ZNF566Q969W8 418 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 PCDHAC1Q9H158 963 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 OR51B6Q9H340 312 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 REV1Q9UBZ9 1251 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 SH3GLB1Q9Y371 365 aa14.26□□□□□ -0.13
PTPRK-208ENST00000392449 BLOC1S5-TXNDC5H3BN57 136 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 UBL3O95164 117 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 HPXP02790 462 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 F13BP05160 661 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 ERCC1P07992 297 aaPredicted RBP14.25□□□□□ -0.13
PTPRK-208ENST00000392449 PGA4P0DJD7 388 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 PGA3P0DJD8 388 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 APEX1P27695 318 aaKnown RBP14.25□□□□□ -0.13
PTPRK-208ENST00000392449 UGT2B15P54855 530 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 ZP4Q12836 540 aa14.25□□□□□ -0.13
PTPRK-208ENST00000392449 RIN1Q13671 783 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms