RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SPACA3Q8IXA5 215 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 EXD3Q8N9H8 876 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF681Q96N22 645 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ALKBH3Q96Q83 286 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 SDHCQ99643 169 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 NIPSNAP1Q9BPW8 284 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZFP64Q9NPA5 681 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ACOXLQ9NUZ1 547 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 TAS2R7Q9NYW3 318 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 WIF1Q9Y5W5 379 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 TGFBR3LH3BV60 316 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 GPX5O75715 221 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ENPP1P22413 925 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 RPS19P39019 145 aaKnown RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 RFX2P48378 723 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 RAB25P57735 213 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZMAT1Q5H9K5 638 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 PLAG1Q6DJT9 500 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 DNM1P34Q6PK57 102 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 NPSR1Q6W5P4 371 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 PPP1R32Q7Z5V6 425 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZER1Q7Z7L7 766 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 GDPD1Q8N9F7 314 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF511Q8NB15 262 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 OR8H1Q8NGG4 311 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 FNDC9Q8TBE3 224 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 LRRC20Q8TCA0 184 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZFAND1Q8TCF1 268 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ADAMTS14Q8WXS8 1223 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 DHRS9Q9BPW9 319 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ENKD1Q9H0I2 346 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 DUSP13Q9UII6 198 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 KIAA1671Q9BY89 1806 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 A0A087WUU8 490 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 A6NLC8 198 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 TRIM3O75382 744 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 PSKH1P11801 424 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 IFNGR1P15260 489 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 SNRPD2P62316 118 aaKnown RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ASAH1Q13510 395 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 PDE7AQ13946 482 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 MICAQ29983 383 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 EIF2S3LQ2VIR3 472 aaKnown RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF791Q3KP31 576 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 SYT14P1Q58G82 188 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 TIGD3Q6B0B8 471 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 DDA1Q9BW61 102 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 C11orf54Q9H0W9 315 aaPredicted RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 SIDT1Q9NXL6 827 aaKnown RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF226Q9NYT6 803 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 CNOT2Q9NZN8 540 aaKnown RBP9.34□□□□□ -0.91
COL6A3-205ENST00000392004 PTPRSQ13332 1948 aa9.34□□□□□ -0.91
COL6A3-205ENST00000392004 ZNF780AO75290 641 aaPredicted RBP9.34□□□□□ -0.92
COL6A3-205ENST00000392004 SLC2A1P11166 492 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 PTGS2P35354 604 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 SLC1A3P43003 542 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 RHAGQ02094 409 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 TEKQ02763 1124 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 PLA2G2CQ5R387 149 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 ATCAYQ86WG3 371 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 AP3S1Q92572 193 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 VSTM2LQ96N03 204 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 TMED9Q9BVK6 235 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 RAB33BQ9H082 229 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 ABCB9Q9NP78 766 aa9.34□□□□□ -0.92
COL6A3-205ENST00000392004 ERVH48-1M5A8F1 160 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 OIP5O43482 229 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 CBR3O75828 277 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 TBX6O95947 436 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 HPP00738 406 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 MAP2K3P46734 347 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 SPHARQ15513 63 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 GPR155Q7Z3F1 870 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 GRINAQ7Z429 371 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 ARL5BQ96KC2 179 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 LMF2Q9BU23 707 aaKnown RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 CDCA4Q9BXL8 241 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 SRRQ9GZT4 340 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 A4GALTQ9NPC4 353 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 MED17Q9NVC6 651 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 STUB1Q9UNE7 303 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 B4DXG7 233 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 NTN3O00634 580 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 NKX2-2O95096 273 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 LCATP04180 440 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 ANKRD34CP0C6C1 535 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 EDN3P14138 238 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 CELP19835 753 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 DRD5P21918 477 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 TMPRSS3P57727 454 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 PSPHP78330 225 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 HNRNPA0Q13151 305 aaKnown RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 MAB21L1Q13394 359 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 LYPD8Q6UX82 237 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 SARAFQ96BY9 339 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 SAP130Q9H0E3 1048 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 NIPAL2Q9H841 368 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 ING1Q9UK53 422 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-205ENST00000392004 TLN2Q9Y4G6 2542 aa9.33□□□□□ -0.92
COL6A3-205ENST00000392004 ZC3H12DA2A288 527 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms