RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SCN1BQ07699 218 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 INPP5JQ15735 1006 aaPredicted RBP16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 LEG1Q6P5S2 330 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 SHFQ7M4L6 423 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 HDDC2Q7Z4H3 204 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 VASH2Q86V25 355 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 OR8H2Q8N162 312 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 OR51G2Q8NGK0 314 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 OR2T4Q8NH00 348 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 TMEM203Q969S6 136 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 Q96M85 177 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 GNRHR2Q96P88 292 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 TXNIPQ9H3M7 391 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 ZFP64Q9NPA5 681 aa16.37■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM186AA6NE01 2351 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 DOCK10Q96BY6 2186 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 DAPL1A0PJW8 107 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 C12orf71A8MTZ7 269 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 CASKO14936 926 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 RGS9O75916 674 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 CELP19835 753 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 SLC2A5P22732 501 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 RPL27P61353 136 aaKnown RBP16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 MYBPHQ13203 477 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 CAMK2BQ13554 666 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 TOMM20Q15388 145 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 OR1C1Q15619 314 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 CCBE1Q6UXH8 406 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 GDPD3Q7L5L3 318 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 LAX1Q8IWV1 398 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 CYB561A3Q8NBI2 242 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 NPEPL1Q8NDH3 523 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 HTRA1Q92743 480 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 RASD2Q96D21 266 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 ALG8Q9BVK2 526 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 MED20Q9H944 212 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 KLF13Q9Y2Y9 288 aaPredicted RBP16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 HRH3Q9Y5N1 445 aa16.36■□□□□ 0.21
CCDC88C-203ENST00000389856 GVINP1Q7Z2Y8 2422 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 A0A1W2PQL4 384 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 CCDC182A6NF36 153 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 C11orf98E9PRG8 122 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 G3V3Y1 287 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 GABRPO00591 440 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 CD46P15529 392 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 MTNR1BP49286 362 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 OR2B6P58173 313 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 MXD1Q05195 221 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 LINC00696Q6ZRV3 163 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 KISS1RQ969F8 398 aaPredicted RBP16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM122AQ96E09 287 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 ARL5BQ96KC2 179 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 TSPAN32Q96QS1 320 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 OR5B2Q96R09 309 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 NMNAT3Q96T66 252 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 CNN2Q99439 309 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 TM9SF2Q99805 663 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 TPK1Q9H3S4 243 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 ABCB9Q9NP78 766 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 CNOT1A5YKK6 2376 aaKnown RBP16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 EML6Q6ZMW3 1958 aa16.35■□□□□ 0.21
CCDC88C-203ENST00000389856 A0A1W2PNV4 684 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 OR5H15A6NDH6 313 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 FABP12A6NFH5 140 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SHISA8B8ZZ34 492 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NPIPA5E9PKD4 350 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SERPINI2O75830 405 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 PMS2P2O95744 297 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 LALBAP00709 142 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 IMPDH2P12268 514 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 PLA2G5P39877 138 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 BLVRAP53004 296 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 RAC1P63000 192 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 CSNK2A1P68400 391 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 MFAP5Q13361 173 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 GGTLC2Q14390 218 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 FAM131AQ6UXB0 335 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 PXKQ7Z7A4 578 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 OR14L1PQ8NHC6 308 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 DIRAS2Q96HU8 199 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NMNAT2Q9BZQ4 307 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 MIXL1Q9H2W2 232 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 FANCFQ9NPI8 374 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ZNF346Q9UL40 294 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NPIPA1Q9UND3 350 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 RPH3AQ9Y2J0 694 aaPredicted RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NOX1Q9Y5S8 564 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 OR2M5A3KFT3 312 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 TRABD2BA6NFA1 517 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 KLRC4-KLRK1H3BQV0 150 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SULT2B1O00204 365 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 DNPH1O43598 174 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 ZIC3O60481 467 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 EIF1BO60739 113 aaKnown RBP16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SLC19A2O60779 497 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 NEURL1O76050 574 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 GLCEO94923 617 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 WDPCPO95876 746 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SBK2P0C263 348 aa16.34■□□□□ 0.21
CCDC88C-203ENST00000389856 SPI1P17947 270 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms