RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SHMT2P34897 504 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CLDN6P56747 220 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SLC36A2Q495M3 483 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SPIN4Q56A73 249 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DPY19L2P1Q6NXN4 242 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 Q6ZVU0 165 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 LINC00471Q8N535 108 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PLPP5Q8NEB5 264 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR5AK2Q8NH90 309 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CMBLQ96DG6 245 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 APOOQ9BUR5 198 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 COMMD5Q9GZQ3 224 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 QRSL1Q9H0R6 528 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RNF39Q9H2S5 420 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 LMAN1LQ9HAT1 526 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CRLF2Q9HC73 371 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GDE1Q9NZC3 331 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DNMT3BQ9UBC3 853 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR51B4Q9Y5P0 310 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 REREQ9P2R6 1566 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 IFITM10A6NMD0 228 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KDM4EB2RXH2 506 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 LGALS2P05162 132 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 C1GALT1C1LP0DN25 315 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 FGF3P11487 239 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 COX6B1P14854 86 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CPN1P15169 458 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KDELR1P24390 212 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 IRS1P35568 1242 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 GPR4P46093 362 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SNRPD2P62316 118 aaKnown RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF90Q03938 601 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DUSP2Q05923 314 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 FAM209BQ5JX69 171 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A10Q63ZE4 541 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CMC1Q7Z7K0 106 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ANKLE1Q8NAG6 615 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DNERQ8NFT8 737 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 WFIKKN2Q8TEU8 576 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TTC9Q92623 222 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DUSP9Q99956 384 aaKnown RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 C16orf70Q9BSU1 422 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 FGF21Q9NSA1 209 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 COL20A1Q9P218 1284 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 USP6P35125 1406 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TRAV18A0A075B6X5 111 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR4F21O95013 312 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ABHD2P08910 425 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 HTR1EP28566 365 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ASCL1P50553 236 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 RABGGTBP53611 331 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC18A1P54219 525 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TBPL1P62380 186 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SHC2P98077 582 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TEKQ02763 1124 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ROM1Q03395 351 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PLEKHS1Q5SXH7 462 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T34Q8NGX1 318 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T3Q8NH03 318 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF502Q8TBZ5 544 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 MCHR1Q99705 422 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 AGO4Q9HCK5 861 aaKnown RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 VPS29Q9UBQ0 182 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TRBC2A0A5B9 178 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PSMB11A5LHX3 300 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ARRDC5A6NEK1 342 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 C12orf71A8MTZ7 269 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 MKRN2OSH3BPM6 223 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 EIF3FO00303 357 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CCL5P13501 91 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 JUNBP17275 347 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 BST1Q10588 318 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC9A3R2Q15599 337 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DHRS13Q6UX07 377 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 GDPGP1Q6ZNW5 385 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SLC7A5P1Q8MH63 180 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 PNPLA1Q8N8W4 532 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 CYP2W1Q8TAV3 490 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DYNC2LI1Q8TCX1 351 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ESAMQ96AP7 390 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM80Q96HE8 168 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM134Q9H6X4 195 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 MED9Q9NWA0 146 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 KCNMB2Q9Y691 235 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 COL6A6A6NMZ7 2263 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 A0A1B0GV72 72 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T8A6NH00 312 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ANKRD63C9JTQ0 380 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 H7BY64 318 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 NUPL2O15504 423 aaKnown RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 DOK2O60496 412 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 RDH16O75452 317 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 IGHV4-34P06331 123 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 SMPD1P17405 629 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 GPR3P46089 330 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR1D4P47884 311 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 OR1D5P58170 312 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 ERVFC1P60507 584 aa4.31□□□□□ -1.72
SCN1A-202ENST00000375405 MEF2AQ02078 507 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-202ENST00000375405 HYAL1Q12794 435 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms