RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 OR1E2P47887 323 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 PPOXP50336 477 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 UGT2B15P54855 530 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 PIGFQ07326 219 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 PIN1Q13526 163 aaPredicted RBP18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 TMEM249Q2WGJ8 235 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 CYBRD1Q53TN4 286 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 NANOGNBQ7Z5D8 188 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 MICU2Q8IYU8 434 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 OR2T12Q8NG77 320 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF566Q969W8 418 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 RCN3Q96D15 328 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 SLC25A44Q96H78 314 aaPredicted RBP18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 VRK1Q99986 396 aaPredicted RBP18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 DENND2DQ9H6A0 471 aaPredicted RBP18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 YAE1D1Q9NRH1 226 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 ADAM21Q9UKJ8 722 aa18.78■□□□□ 0.6
CCDC28B-201ENST00000373602 SONP18583 2426 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 ZNF14P17017 642 aaPredicted RBP18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 FUT1P19526 365 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 PDLIM4P50479 330 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 DAG1Q14118 895 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 MELKQ14680 651 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 LRRC23Q53EV4 343 aaPredicted RBP18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 LRFN4Q6PJG9 635 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 PIWIL3Q7Z3Z3 882 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 POU5F2Q8N7G0 328 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 PFN4Q8NHR9 129 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 RP9Q8TA86 221 aaKnown RBP18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 TMEM255BQ8WV15 326 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 MS4A3Q96HJ5 214 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 DOK1Q99704 481 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 MED4Q9NPJ6 270 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 CMTM6Q9NX76 183 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 AP3M1Q9Y2T2 418 aa18.77■□□□□ 0.6
CCDC28B-201ENST00000373602 CHD3Q12873 2000 aaKnown RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 ELOVL7A1L3X0 281 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 KIAA1324LA8MWY0 1029 aaPredicted RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 BLOC1S5-TXNDC5H3BN57 136 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 hCG_2039718K7EN88 272 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 OR7A10O76100 309 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 UBL3O95164 117 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 BCL10O95999 233 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 PGA4P0DJD7 388 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 PGA3P0DJD8 388 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 THRBP10828 461 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 ZNF35P13682 527 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 NR4A1P22736 598 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 MDH1P40925 334 aaKnown RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 GIPRP48546 466 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 PTDSS1P48651 473 aaKnown RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 RAB1AP62820 205 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 VLDLRP98155 873 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 RPL18Q07020 188 aaKnown RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 SNTB2Q13425 540 aaKnown RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 ANKS4BQ8N8V4 417 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 TMEM239Q8WW34 195 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 LIPHQ8WWY8 451 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 SGTBQ96EQ0 304 aa18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 MYOZ1Q9NP98 299 aaPredicted RBP18.76■□□□□ 0.59
CCDC28B-201ENST00000373602 TMEM129A0AVI4 362 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 VWC2LB2RUY7 222 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 NDUFS8O00217 210 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 DHHO43323 396 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 SELENOWP63302 87 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 KRT80Q6KB66 452 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 SPATA21Q7Z572 469 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 ARPINQ7Z6K5 226 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 SKA3Q8IX90 412 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 SLC15A3Q8IY34 581 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 SVOPLQ8N434 492 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 RAB1BQ9H0U4 201 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 C20orf141Q9NUB4 165 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 TMEM38BQ9NVV0 291 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 FBXL3Q9UKT7 428 aa18.75■□□□□ 0.59
CCDC28B-201ENST00000373602 YLPM1P49750 1951 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 A0A1W2PRG6 482 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 A8MV72 311 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 ENTPD5O75356 428 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 RAB36O95755 333 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 IGHG1P01857 330 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 QDPRP09417 244 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 TSPAN19P0C672 248 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 USF1P22415 310 aaPredicted RBP18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 HIST3H3Q16695 136 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 SLC22A24Q8N4F4 322 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 TPD52L3Q96J77 140 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 PIMREGQ9BSJ6 248 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 MRPL13Q9BYD1 178 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 GMPR2Q9P2T1 348 aaKnown RBP18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 MED31Q9Y3C7 131 aa18.74■□□□□ 0.59
CCDC28B-201ENST00000373602 LOC390937A0A1W2PQ73 354 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 CENPBD1B2RD01 187 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 CCDC22O60826 627 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 F13BP05160 661 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 PATE4P0C8F1 98 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 OR8G3PP0DMU2 310 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 COX4I1P13073 169 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 AQP2P41181 271 aa18.73■□□□□ 0.59
CCDC28B-201ENST00000373602 RUNX1T1Q06455 604 aa18.73■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms