RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 WDYHV1Q96HA8 205 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 TSPAN32Q96QS1 320 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 YTHDF1Q9BYJ9 559 aaKnown RBP8.21□□□□□ -1.1
USP4-202ENST00000351842 TAS2R16Q9NYV7 291 aa8.21□□□□□ -1.1
USP4-202ENST00000351842 NCOA6Q14686 2063 aaPredicted RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 TMEM8BA6NDV4 472 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 MS4A18H0YCH9 400 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 DOK2O60496 412 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 NPIPB7O75200 414 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ASAH2BP0C7U1 165 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ZNF708P17019 499 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 GSTM3P21266 225 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ACVR2AP27037 513 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 CDKN2AP42771 156 aaKnown RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 CLRN1P58418 232 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 TUBA1BP68363 451 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 STK11Q15831 433 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ZNF239Q16600 458 aaKnown RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 PGGHGQ32M88 737 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 MS4A18Q3C1V0 323 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 TMEM53Q6P2H8 277 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 PLEKHG7Q6ZR37 379 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 TMPRSS11FQ6ZWK6 438 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 TUBA1AQ71U36 451 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ZNF100Q8IYN0 542 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 TSPAN14Q8NG11 270 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 OR51G2Q8NGK0 314 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 MFSD8Q8NHS3 518 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 SLC38A2Q96QD8 506 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 NUAK2Q9H093 628 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 FKRPQ9H9S5 495 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 BRD7Q9NPI1 651 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 MYRFQ9Y2G1 1151 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 NOSIPQ9Y314 301 aaKnown RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 HDGFL3Q9Y3E1 203 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 FTCDNL1E5RQL4 147 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ENTPD6O75354 484 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 GUSBP08236 651 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ADH6P28332 368 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 NTF4P34130 210 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 FOXG1P55316 489 aaPredicted RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 RAC3P60763 192 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 FAPQ12884 760 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 PDSS1Q5T2R2 415 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 CORO6Q6QEF8 472 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 RASSF6Q6ZTQ3 369 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 AAED1Q7RTV5 226 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 C9orf106Q8NAJ2 232 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 STK35Q8TDR2 534 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 POP5Q969H6 163 aaKnown RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 GPR137Q96N19 417 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 TEX12Q9BXU0 123 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ANKRD19PQ9H560 264 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 HINT3Q9NQE9 182 aaKnown RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 ASB6Q9NWX5 421 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 GTF2A1LQ9UNN4 478 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 RNF6Q9Y252 685 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 OR6C68A6NDL8 312 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 FAM20BO75063 409 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 MRPL33O75394 65 aaKnown RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 TP53P04637 393 aaPredicted RBP8.2□□□□□ -1.1
USP4-202ENST00000351842 CD14P08571 375 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 SGCAQ16586 387 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 VWA1Q6PCB0 445 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 PAQR6Q6TCH4 344 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 FGD2Q7Z6J4 655 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 LINC00346Q8IVM7 164 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 OR9K2Q8NGE7 335 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 NRBF2Q96F24 287 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 APOL4Q9BPW4 351 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 ZNF229Q9UJW7 825 aa8.2□□□□□ -1.1
USP4-202ENST00000351842 IGKV1D-43A0A0B4J1Z2 117 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 PRR23D1E9PI22 279 aaPredicted RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 ZNF208O43345 1280 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 PRR23D2P0DMB1 279 aaPredicted RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 KHDRBS1Q07666 443 aaKnown RBP eCLIP8.19□□□□□ -1.1
USP4-202ENST00000351842 EMC4Q5J8M3 183 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 TMEM201Q5SNT2 666 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 TTC23Q5W5X9 447 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 NUFIP2Q7Z417 695 aaKnown RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 ZNF554Q86TJ5 538 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ENTHD1Q8IYW4 607 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 SCAIQ8N9R8 606 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ZNRF4Q8WWF5 429 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ZC3HAV1LQ96H79 300 aaKnown RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 NAA11Q9BSU3 229 aaPredicted RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 DGCR6LQ9BY27 220 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 OR51B6Q9H340 312 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ACKR4Q9NPB9 350 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 FBXO9Q9UK97 447 aaPredicted RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 FAM90A27PA6NNH2 459 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ERVH48-1M5A8F1 160 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 TRMUO75648 421 aaKnown RBP8.19□□□□□ -1.1
USP4-202ENST00000351842 ZNF17P17021 662 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ZNF3P17036 446 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 PCSK6P29122 969 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 PCYT1AP49585 367 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 PRPS1P60891 318 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 ODF4Q2M2E3 257 aa8.19□□□□□ -1.1
USP4-202ENST00000351842 MESTQ5EB52 335 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms