RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 GDF1P27539 372 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 TACR3P29371 465 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 LSAMPQ13449 338 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 MPPED2Q15777 294 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CPSF6Q16630 551 aaKnown RBP eCLIP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF528Q3MIS6 628 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 TRNP1Q6NT89 227 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 LILRB2Q8N423 598 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 OR6N1Q8NGY5 312 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 GLYATL2Q8WU03 294 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 EID2BQ96D98 161 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 PRTFDC1Q9NRG1 225 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CA10Q9NS85 328 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SLC17A7Q9P2U7 560 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 BTNL2Q9UIR0 455 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 MOB4Q9Y3A3 225 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 BOLA1Q9Y3E2 137 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 NCKAP5O14513 1909 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 FAM149AA5PLN7 773 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 FAM90A27PA6NNH2 459 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 TCAPO15273 167 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 UPK1BO75841 260 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF865P0CJ78 1059 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 HAPLN1P10915 354 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CPEP16870 476 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 AHRP35869 848 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 GPR3P46089 330 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 KCNJ3P48549 501 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 PSMB3P49720 205 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SSR4P51571 173 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 TMEM183BQ1AE95 376 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 GGTA1PQ4G0N0 100 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 RNF111Q6ZNA4 994 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 MEPCEQ7L2J0 689 aaKnown RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 LRRTM1Q86UE6 522 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SLC38A6Q8IZM9 456 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 STPG2Q8N412 459 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ZBTB45Q96K62 511 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF75AQ96N20 296 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SMG9Q9H0W8 520 aaKnown RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 PLEKHF2Q9H8W4 249 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 UBTD1Q9HAC8 227 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 UBE2J1Q9Y385 318 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 DNAJC25-GNG10A0A024R161 153 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 A0A1B0GVT2 93 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 WDR27A2RRH5 827 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 A8MUA0 341 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 H7BY64 318 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 GATCO43716 136 aaKnown RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SRPX2O60687 465 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 FMO6PO60774 539 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 IL5P05113 134 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 GP1BAP07359 652 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 OR2T7P0C7T2 308 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 POU3F2P20265 443 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 HMGCLP35914 325 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 BCL6P41182 706 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 NAA10P41227 235 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 STC1P52823 247 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 MTCP1P56278 107 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 PCBP2Q15366 365 aaKnown RBP eCLIP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 IL17AQ16552 155 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SMTNL2Q2TAL5 461 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CRTC1Q6UUV9 634 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 BTNL8Q6UX41 500 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 C12orf54Q6X4T0 127 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ZNF620Q6ZNG0 422 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SLC39A11Q8N1S5 342 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 OR13C9Q8NGT0 318 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 OR2T27Q8NH04 317 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 RHOXF1Q8NHV9 184 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 XAGE5Q8WWM1 108 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 RTP4Q96DX8 246 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SLC39A13Q96H72 371 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 DLL4Q9NR61 685 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 RXFP3Q9NSD7 469 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CA5BQ9Y2D0 317 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ENPP4Q9Y6X5 453 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 MED12Q93074 2177 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 IGLON5A6NGN9 336 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 J3QW42 95 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 HSD17B6O14756 317 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 KDELR3O43731 214 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CREG1O75629 220 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 SCGB1D2O95969 90 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CHRM4P08173 479 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 GAAP10253 952 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 FABP4P15090 132 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ENPP1P22413 925 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 EPHA3P29320 983 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 KDELR2P33947 212 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 NKX2-5P52952 324 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 ADARB1P78563 741 aaKnown RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 OLIG2Q13516 323 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 TAZQ16635 292 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 HLA-BQ31612 363 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CDCA2Q69YH5 1023 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 VHLLQ6RSH7 139 aa3.05□□□□□ -1.92
CSMD3-202ENST00000339701 CCBE1Q6UXH8 406 aaPredicted RBP3.05□□□□□ -1.92
CSMD3-202ENST00000339701 Q6ZRG5 221 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms