RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 CBFBQ13951 182 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 NDUFA9Q16795 377 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 C9orf64Q5T6V5 341 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 REEP3Q6NUK4 255 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DRAM2Q6UX65 266 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 UNQ9370/PRO34162Q6UXP9 181 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 IL34Q6ZMJ4 242 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 IQCHQ86VS3 1027 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 TMEM200AQ86VY9 491 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 GKN2Q86XP6 184 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 C19orf47Q8N9M1 422 aaKnown RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 OR6T1Q8NGN1 323 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 NUBPLQ8TB37 319 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 TCTN2Q96GX1 697 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 LURAP1Q96LR2 239 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 SSX3Q99909 188 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 EGFL8Q99944 293 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ALG8Q9BVK2 526 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ZDHHC6Q9H6R6 413 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PARPBPQ9NWS1 579 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PPP4R1LQ9P1A2 415 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ZDHHC8Q9ULC8 765 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 SLC35A3Q9Y2D2 325 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 MDC1Q14676 2089 aaKnown RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PDZD2O15018 2839 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 CCDC187A0A096LP49 1063 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 A0A1B0GW55 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 A0A1W2PPH5 198 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 OR5H14A6NHG9 310 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ANKRD66B4E2M5 251 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 MCIDASD6RGH6 385 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 SLC25A14O95258 325 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 F13BP05160 661 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 IGHV4-34P06331 123 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ZGLP1P0C6A0 271 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4L2P0CJ85 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4L3P0CJ86 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4L4P0CJ87 422 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4L5P0CJ88 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4L6P0CJ89 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4L7P0CJ90 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 CSNK1DP48730 415 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PKIAP61925 76 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 LMAN2Q12907 356 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ACSM3Q53FZ2 586 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 VWA2Q5GFL6 755 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 GLT8D1Q68CQ7 371 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 SSX6Q7RTT6 188 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 CCDC116Q8IYX3 515 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PRSS35Q8N3Z0 413 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 RFLNBQ8N5W9 214 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ZBTB2Q8N680 514 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 KDF1Q8NAX2 398 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 RPS4Y2Q8TD47 263 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ISOC2Q96AB3 205 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 CXorf40BQ96DE9 158 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 F2RL3Q96RI0 385 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 MTERF1Q99551 399 aaKnown RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 METTL9Q9H1A3 318 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 RIMS4Q9H426 269 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 CXorf36Q9H7Y0 433 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 THAP10Q9P2Z0 257 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DUX4Q9UBX2 424 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 HRNRQ86YZ3 2850 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 A0A087X0M5 115 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 A0A1B0GX30 115 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 H0YIV9 168 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 HMGN4O00479 90 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PHOX2AO14813 284 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 EREGO14944 169 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 BRINP1O60477 761 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 UGDHO60701 494 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ALOX12BO75342 701 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 IFNA2P01563 188 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 TMIGD3P0DMS9 266 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 HKR1P10072 659 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 HLA-GP17693 338 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 CPT2P23786 658 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ADPRHP54922 357 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 SLC26A5P58743 744 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 RAB2AP61019 212 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 HNRNPKP61978 463 aaKnown RBP eCLIP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ARF5P84085 180 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 TMEM115Q12893 351 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ARHGEF7Q14155 803 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 MLF2Q15773 248 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ALG11Q2TAA5 492 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 BEX5Q5H9J7 111 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 HENMT1Q5T8I9 393 aaKnown RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 PWWP2BQ6NUJ5 590 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 Q6ZVU0 165 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 DPPA4Q7L190 304 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ASCL5Q7RTU5 278 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 FAM160A2Q8N612 972 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 OR4C16Q8NGL9 310 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 OR5M8Q8NGP6 311 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 RAB3CQ96E17 227 aa5.08□□□□□ -1.6
CSDE1-202ENST00000339438 TEFMQ96QE5 360 aaKnown RBP5.08□□□□□ -1.6
CSDE1-202ENST00000339438 ZNF559Q9BR84 538 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms