RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ZNF391Q9UJN7 358 aa6.26□□□□□ -1.41
SF3B1-201ENST00000335508 EXO1Q9UQ84 846 aaKnown RBP6.26□□□□□ -1.41
SF3B1-201ENST00000335508 KCNIP3Q9Y2W7 256 aa6.26□□□□□ -1.41
SF3B1-201ENST00000335508 WNK1Q9H4A3 2382 aa6.26□□□□□ -1.41
SF3B1-201ENST00000335508 K7ESF4 209 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 FZD7O75084 574 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ATP6V1G1O75348 118 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 POU3F4P49335 361 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ENTPD1P49961 510 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MVDP53602 400 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ATP1B3P54709 279 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 BIDP55957 195 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ARPC4P59998 168 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 HNRNPA0Q13151 305 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 LIPNQ5VXI9 398 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 UXS1Q8NBZ7 420 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 NUDT8Q8WV74 236 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 APOBEC4Q8WW27 367 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 CTHRC1Q96CG8 243 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 JAM3Q9BX67 310 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 A0A075B6Q4 140 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 PLSCR5A0PG75 271 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 GGT3PA6NGU5 568 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 RLN2P04090 185 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 CD3GP09693 182 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 LIPCP11150 499 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 EVI2BP34910 448 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 VBP1P61758 197 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 HSF1Q00613 529 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 CAMK2DQ13557 499 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MEP1BQ16820 701 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 C8orf82Q6P1X6 216 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 TBPL2Q6SJ96 375 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 GTPBP8Q8N3Z3 284 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 NKAIN3Q8N8D7 197 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 M1APQ8TC57 530 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 RELTQ969Z4 430 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 WDR77Q9BQA1 342 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 NTN4Q9HB63 628 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MED11Q9P086 117 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 NOSIPQ9Y314 301 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MEMO1Q9Y316 297 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 PCDHGA6Q9Y5G7 932 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ABCA12Q86UK0 2595 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 A0A1W2PQM1 296 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 RGS9O75916 674 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 PPP1CAP62136 330 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 RPL18Q07020 188 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 DCAF10Q5QP82 559 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 THEM4Q5T1C6 240 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 HACD4Q5VWC8 232 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 THOC7Q6I9Y2 204 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 LANCL3Q6ZV70 420 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 USP51Q70EK9 711 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 OR2V1Q8NHB1 315 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 KCNG3Q8TAE7 436 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF285Q96NJ3 590 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 SLCO5A1Q9H2Y9 848 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 DPAGT1Q9H3H5 408 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 CPNE5Q9HCH3 593 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 PRDM6Q9NQX0 595 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MAN2C1Q9NTJ4 1040 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 AASSQ9UDR5 926 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 EDARQ9UNE0 448 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 B3GNT3Q9Y2A9 372 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 B3GALT1Q9Y5Z6 326 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 IGKV1-8A0A0C4DH67 115 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 IGHV5-10-1A0A0J9YXX1 117 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 POM121CA8CG34 1229 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF878C9JN71 531 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 F5H5K5 113 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 INMT-MINDY4F8WBC2 141 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 KLK10O43240 276 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 TP53P04637 393 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 TMEM225BP0DP42 221 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 APLNRP35414 380 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 RPS5P46782 204 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 LSAMPQ13449 338 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 SLCO4A1Q96BD0 722 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MED28Q9H204 178 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 SLC26A1Q9H2B4 701 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 FBXL3Q9UKT7 428 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 WASF3Q9UPY6 502 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 OTOFQ9HC10 1997 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 IFNA21P01568 189 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 OR8G3PP0DMU2 310 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MAKP20794 623 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 BMXP51813 675 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 SLC25A1P53007 311 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 MLLT10P55197 1068 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 GRB2P62993 217 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 CNN3Q15417 329 aaKnown RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 YIF1BQ5BJH7 314 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 LINGO2Q7L985 606 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF679Q8IYX0 411 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 OR8S1Q8NH09 359 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 VRK1Q99986 396 aaPredicted RBP6.25□□□□□ -1.41
SF3B1-201ENST00000335508 FUZQ9BT04 418 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 ZFP57Q9NU63 452 aa6.25□□□□□ -1.41
SF3B1-201ENST00000335508 FAM86C1Q9NVL1 165 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms