RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TMED6Q8WW62 240 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ARL5BQ96KC2 179 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 LMF1Q96S06 567 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 MYADMQ96S97 322 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 WDR77Q9BQA1 342 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 LGR4Q9BXB1 951 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 MFRPQ9BY79 579 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 DPEP2Q9H4A9 486 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEM74BQ9NUR3 256 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GHRLQ9UBU3 117 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GPN3Q9UHW5 284 aaPredicted RBP12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ADAM29Q9UKF5 820 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ICAM5Q9UMF0 924 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF780BQ9Y6R6 833 aa12.26□□□□□ -0.45
CCDC88C-201ENST00000331194 GGT3PA6NGU5 568 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 CTAG2O75638 210 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 RPLP2P05387 115 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 CASRP41180 1078 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 MRPS10P82664 201 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 DHRS2Q13268 280 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 PON3Q15166 354 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 NKPD1Q17RQ9 610 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 LIPNQ5VXI9 398 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 SLC39A5Q6ZMH5 540 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 NPAS4Q8IUM7 802 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 DMBX1Q8NFW5 382 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 RSRP1Q9BUV0 290 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 PAPOLGQ9BWT3 736 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 SELENOIQ9C0D9 397 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 SFXN1Q9H9B4 322 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEM72A0PK05 275 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 POM121BA6NF01 834 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 EFCAB7A8K855 629 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 IFNA4P05014 189 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 CALCBP10092 127 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 C6P13671 934 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 APEHP13798 732 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 BTN3A2P78410 334 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 C9orf152Q5JTZ5 239 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 SLC29A4Q7RTT9 530 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 NAA40Q86UY6 237 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 AMZ2Q86W34 360 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 OR5K2Q8NHB8 316 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 NUS1Q96E22 293 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 MRGPRX3Q96LB0 322 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 FLRT3Q9NZU0 649 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 FRRS1LQ9P0K9 344 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 APOBEC3BQ9UH17 382 aaKnown RBP12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 MPDZO75970 2070 aa12.25□□□□□ -0.45
CCDC88C-201ENST00000331194 SULT2B1O00204 365 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 AGPAT2O15120 278 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF28P17035 718 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 RPL4P36578 427 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 VASPP50552 380 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 FAM122BQ7Z309 247 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 TMEFF1Q8IYR6 380 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 HRH4Q9H3N8 390 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 EPHX3Q9H6B9 360 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 COMMD9Q9P000 198 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 EPHA6Q9UF33 1036 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 COL6A3P12111 3177 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 COLCA2A8K830 154 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 EEF1E1-BLOC1S5C9J1V9 151 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CLEC3AO75596 197 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 LY86O95711 162 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 AMY2AP04746 511 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CSF1P09603 554 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 AGTR1P30556 359 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 NR0B1P51843 470 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 NTHL1P78549 312 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 MESP2Q0VG99 397 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 UQCC3Q6UW78 93 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 DNM1P46Q6ZS02 220 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF761Q86XN6 746 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CACUL1Q86Y37 369 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 OR2A1Q8NGT9 310 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 TRIM43Q96BQ3 446 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ZNF764Q96H86 408 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 IGSF21Q96ID5 467 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CNTNAP3BQ96NU0 1288 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 NAA11Q9BSU3 229 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 MBD2Q9UBB5 411 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 A0A0B4J2A0 478 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 IFNGP01579 166 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ITGB2P05107 769 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 KLK3P07288 261 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 PGAM2P15259 253 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 LAG3P18627 525 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CD34P28906 385 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 MNX1P50219 401 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 TRA2BP62995 288 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 POU4F2Q12837 409 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ILF3Q12906 894 aaKnown RBP eCLIP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 RAB33AQ14088 237 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 GFOD2Q3B7J2 385 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 LY6G5CQ5SRR4 150 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 ATPAF1Q5TC12 328 aaPredicted RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 CD163Q86VB7 1156 aa12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 RNF113BQ8IZP6 322 aaKnown RBP12.24□□□□□ -0.45
CCDC88C-201ENST00000331194 GABRG1Q8N1C3 465 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms