RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF740Q8NDX6 193 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 RLN3Q8WXF3 142 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 SDSLQ96GA7 329 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 NARFLQ9H6Q4 476 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 TP53TG5Q9Y2B4 290 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 A0A1B0GUH1 482 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 ZAR1LA6NP61 321 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 IL33O95760 270 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 LAP3P28838 519 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 CD80P33681 288 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 KCNJ10P78508 379 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 ZNF808Q8N4W9 903 aaPredicted RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 MFSD9Q8NBP5 474 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 CPNE4Q96A23 557 aaPredicted RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 ACER3Q9NUN7 267 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 ZMAT5Q9UDW3 170 aaKnown RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 SLC23A1Q9UHI7 598 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 SNRPGP15A8MWD9 76 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 AIFM1O95831 613 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 ACSM4P0C7M7 580 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 RNF4P78317 190 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 RPP30P78346 268 aaKnown RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 MRPL2Q5T653 305 aaKnown RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 RAET1LQ5VY80 246 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 USP51Q70EK9 711 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 LILRA3Q8N6C8 439 aaPredicted RBP10.62□□□□□ -0.71
VPS39-201ENST00000318006 OR52R1Q8NGF1 315 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 HPSE2Q8WWQ2 592 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 FAM3DQ96BQ1 224 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 TXN2Q99757 166 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 MED18Q9BUE0 208 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 CXorf36Q9H7Y0 433 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 TAAR2Q9P1P5 351 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 MUTYHQ9UIF7 546 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 GAB2Q9UQC2 676 aa10.62□□□□□ -0.71
VPS39-201ENST00000318006 LOC100289279A0A1B0GTE1 492 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 C20orf202A1L168 122 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 FXYD1O00168 92 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 ZNF28P17035 718 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 EN2P19622 333 aaPredicted RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 OMGP23515 440 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 RAD52P43351 418 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 PFN3P60673 137 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 RPS18P62269 152 aaKnown RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 TMEM52BQ4KMG9 183 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 KIAA0907Q7Z7F0 614 aaPredicted RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 RSC1A1Q92681 617 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 TAAR5O14804 337 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 SYNGR4O95473 234 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 NSA2O95478 260 aaKnown RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 RD3LP0DJH9 198 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 CALCBP10092 127 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 MGMTP16455 207 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 IRS1P35568 1242 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 OR2B8PP59922 312 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 EXOSC7Q15024 291 aaKnown RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 PDZD11Q5EBL8 140 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 ZNF439Q8NDP4 499 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 TMED6Q8WW62 240 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 WBP2Q969T9 261 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 SGK3Q96BR1 496 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 TNFRSF13CQ96RJ3 184 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 MS4A8Q9BY19 250 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 OBP2AQ9NY56 170 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 LOXHD1Q8IVV2 1947 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 GPR171O14626 319 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 TGOLN2O43493 480 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 NAGAP17050 411 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 CD38P28907 300 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 RAB1AP62820 205 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 ALKBH1Q13686 389 aaKnown RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 ZNF239Q16600 458 aaKnown RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 EEF1A1P5Q5VTE0 462 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 PRAMEF8Q5VWM4 474 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 PRAMEF7Q5VXH5 474 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 TMEM59Q9BXS4 323 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 UBQLN3Q9H347 655 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 F5H5K5 113 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 H0YGG7 62 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 CCSO14618 274 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 B4GALT3O60512 393 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 LCATP04180 440 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 MAKP20794 623 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 SERPINA2P20848 420 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 VASPP50552 380 aaPredicted RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 ZNF77Q15935 545 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 RNF151Q2KHN1 245 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 WBP2NLQ6ICG8 309 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 PAQR6Q6TCH4 344 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 BAGE3Q86Y29 109 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 BAGE2Q86Y30 109 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 GPR137CQ8N3F9 429 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 MFSD4AQ8N468 514 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 OR5M8Q8NGP6 311 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 OLIG1Q8TAK6 271 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 BCL7CQ8WUZ0 217 aaPredicted RBP10.61□□□□□ -0.71
VPS39-201ENST00000318006 APH1BQ8WW43 257 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 LYSMD1Q96S90 227 aa10.61□□□□□ -0.71
VPS39-201ENST00000318006 C1QTNF3Q9BXJ4 246 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms