RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 A0A1B0GWB2 263 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 MEIOCA2RUB1 952 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 C4orf47A7E2U8 309 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 DENRO43583 198 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 PLRG1O43660 514 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 TYMSP04818 313 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 NECTIN1Q15223 517 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CNIH2Q6PI25 160 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ZFPM1Q8IX07 1006 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 METTL27Q8N6F8 245 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 PACRGLQ8N7B6 248 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 OR9A2Q8NGT5 310 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 OR5AK2Q8NH90 309 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CDS1Q92903 461 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 FCRL1Q96LA6 429 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 GPR20Q99678 358 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 UNC93B1Q9H1C4 597 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 LHX3Q9UBR4 397 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 TUBE1Q9UJT0 475 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CDK12Q9NYV4 1490 aaPredicted RBP7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CDC42BPBQ9Y5S2 1711 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ADGRB1O14514 1584 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 C1QTNF3-AMACRE9PGA6 284 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC37A4O43826 429 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 RRASP10301 218 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 PF4V1P10720 104 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CD46P15529 392 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 SPI1P17947 270 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 IER3P46695 156 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ADIGQ0VDE8 80 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 FOXO1Q12778 655 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 GPR18Q14330 331 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF626Q68DY1 528 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 TIFAQ96CG3 184 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 FAXDC2Q96IV6 333 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 NRXN1Q9ULB1 1477 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 MAP3K4Q9Y6R4 1608 aa7.1□□□□□ -1.27
LIMCH1-201ENST00000313860 CDC14CA4D256 554 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PCSK2P16519 638 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 FPR3P25089 353 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ADORA2AP29274 412 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OR3A4PP47883 348 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PCBP4P57723 403 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TAS2R19P59542 299 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 C1QTNF8P60827 252 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 LSM11P83369 360 aaKnown RBP eCLIP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 GPR50Q13585 617 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PTPRCAPQ14761 206 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TCTE1Q5JU00 501 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SIRPB2Q5JXA9 342 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 RNFT1Q5M7Z0 435 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 C1orf185Q5T7R7 199 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC24A5Q71RS6 500 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OLIG3Q7RTU3 272 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC16A10Q8TF71 515 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OR5P2Q8WZ92 322 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OSTF1Q92882 214 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 CCDC17Q96LX7 622 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC38A3Q99624 504 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PRRT1Q99946 306 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 KCND3Q9UK17 655 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 MRPS16Q9Y3D3 137 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 GLI2P10070 1586 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ARHGEF40Q8TER5 1519 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TRAV27A0A087WT01 109 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 LOC389332A0A1B0GUA5 103 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 TRABD2BA6NFA1 517 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 GPR182O15218 404 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC43A1O75387 559 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 LCATP04180 440 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PNMTP11086 282 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ENGP17813 658 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 FHITP49789 147 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 WDR4P57081 412 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SNRPD1P62314 119 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ZXDBP98169 803 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 MEIG1Q5JSS6 88 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 KLHDC7AQ5VTJ3 777 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 APOOLQ6UXV4 268 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ZNF429Q86V71 674 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 OR6F1Q8NGZ6 308 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SFXN5Q8TD22 340 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 MYOZ3Q8TDC0 251 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 AENQ8WTP8 325 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 SLC7A6Q92536 515 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 GPR87Q9BY21 358 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 C6orf106Q9H6K1 298 aaPredicted RBP7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 NDRG3Q9UGV2 375 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 BOLA1Q9Y3E2 137 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 STYXL1Q9Y6J8 313 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 B4DXG7 233 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ST8SIA3O43173 380 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 AOC1P19801 751 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 MAGEA5P43359 124 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 KCNJ3P48549 501 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 EFNA3P52797 238 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 NUBP1P53384 320 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 C21orf58P58505 322 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 ACSM1Q08AH1 577 aa7.09□□□□□ -1.27
LIMCH1-201ENST00000313860 PRICKLE4Q2TBC4 344 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms