RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 POU3F4P49335 361 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 PRKXP51817 358 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF136P52737 540 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 TAGLNQ01995 201 aaKnown RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 PM20D2Q8IYS1 436 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 MUC20Q8N307 709 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 OR2M4Q96R27 311 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 KCNJ15Q99712 375 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 APOOQ9BUR5 198 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 SMIM3Q9BZL3 60 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ACAD8Q9UKU7 415 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 KANTRA0A1W2PQU2 76 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 URADA6NGE7 173 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 DCTN6O00399 190 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 SDC3O75056 442 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 HTR3BO95264 441 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 RAB3DO95716 219 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 LCN10Q6JVE6 187 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ARHGAP11AQ6P4F7 1023 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 HAGHLQ6PII5 290 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF101Q8IZC7 436 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 OR5D18Q8NGL1 313 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 TINAGL1Q9GZM7 467 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 POLMQ9NP87 494 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 OR5V1Q9UGF6 321 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 POMT2Q9UKY4 750 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 MUC22E2RYF6 1773 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 A0A0B4J2A0 478 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 CFL1P23528 166 aaKnown RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 AVPR2P30518 371 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ARL4DP49703 201 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 GK2Q14410 553 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ALG10Q5BKT4 473 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF776Q68DI1 518 aaPredicted RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 FCRL6Q6DN72 434 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 CBLN3Q6UW01 205 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF765Q7L2R6 523 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF615Q8N8J6 731 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 GPR119Q8TDV5 335 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 MAFIPQ8WZ33 124 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 C7orf50Q9BRJ6 194 aaKnown RBP13.3□□□□□ -0.28
PTPN9-201ENST00000306726 SHPKQ9UHJ6 478 aa13.3□□□□□ -0.28
PTPN9-201ENST00000306726 MEIKINA0A087WXM9 373 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 BHLHE40O14503 412 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SPI1P17947 270 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 THBS2P35442 1172 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 EPHA4P54764 986 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SEC61A1P61619 476 aaKnown RBP13.29□□□□□ -0.28
PTPN9-201ENST00000306726 RBM39Q14498 530 aaKnown RBP13.29□□□□□ -0.28
PTPN9-201ENST00000306726 GLT8D1Q68CQ7 371 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 TSSK4Q6SA08 328 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF227Q86WZ6 799 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 METTL21AQ8WXB1 218 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SORCS2Q96PQ0 1159 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 PRSS27Q9BQR3 290 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 HRH4Q9H3N8 390 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 ELOVL3Q9HB03 270 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 DAPP1Q9UN19 280 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 FAM74A7A6NL05 159 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SLC16A7O60669 478 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SCGB1D2O95969 90 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 CEACAM5P06731 702 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 PEBP1P30086 187 aaKnown RBP13.29□□□□□ -0.28
PTPN9-201ENST00000306726 PRSS3P35030 304 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 DRD3P35462 400 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 HSD17B2P37059 387 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 OR1D4P47884 311 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 CXADRP78310 365 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 TNFRSF17Q02223 184 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 ILF3Q12906 894 aaKnown RBP eCLIP13.29□□□□□ -0.284e-7■■■■□ 25.2
PTPN9-201ENST00000306726 ETFDHQ16134 617 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 FAM74A3Q4VXF1 159 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 OR52W1Q6IF63 320 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 FBXO42Q6P3S6 717 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 IQCF2Q8IXL9 164 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 BATF2Q8N1L9 274 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SMIM19Q96E16 107 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 KCNG2Q9UJ96 466 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 ZNF281Q9Y2X9 895 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 TNFSF12O43508 249 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 HLA-AP01891 365 aaKnown RBP13.29□□□□□ -0.28
PTPN9-201ENST00000306726 HOXB2P14652 356 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 PGAM2P15259 253 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 KIR2DL1P43626 348 aaPredicted RBP13.29□□□□□ -0.28
PTPN9-201ENST00000306726 HLXQ14774 488 aaPredicted RBP13.29□□□□□ -0.28
PTPN9-201ENST00000306726 C1orf189Q5VU69 101 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 CARD17Q5XLA6 110 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 USP53Q70EK8 1073 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 ABHD13Q7L211 337 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 TMEM200AQ86VY9 491 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 SMIM4Q8WVI0 70 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 GPER1Q99527 375 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 ARHGDIGQ99819 225 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 POFUT1Q9H488 388 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 WASH6PQ9NQA3 447 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 KLHDC2Q9Y2U9 406 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 HEATR5AQ86XA9 2040 aa13.29□□□□□ -0.28
PTPN9-201ENST00000306726 CELA2BP08218 269 aaPredicted RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms