RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MAD2L1BPQ15013 274 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 MSMPQ1L6U9 139 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 ENTPD8Q5MY95 495 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 BEND6Q5SZJ8 279 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 LIPNQ5VXI9 398 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 ZNF613Q6PF04 617 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 PXKQ7Z7A4 578 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 HPS1Q92902 700 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 ARHGDIGQ99819 225 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 DENND2DQ9H6A0 471 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 SLC52A3Q9NQ40 469 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 ZNF224Q9NZL3 707 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 REV1Q9UBZ9 1251 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 TMEFF2Q9UIK5 374 aaPredicted RBP10.99□□□□□ -0.65
CD44-203ENST00000278386 GMEB1Q9Y692 573 aa10.99□□□□□ -0.65
CD44-203ENST00000278386 TCF21O43680 179 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 FMO6PO60774 539 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 ENTPD5O75356 428 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 CH25HO95992 272 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 PATE4P0C8F1 98 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 ZNF35P13682 527 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 GLRXP35754 106 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 EVX1P49640 407 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 PCBP3P57721 371 aaKnown RBP10.98□□□□□ -0.65
CD44-203ENST00000278386 RBBP4Q09028 425 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 SELPLGQ14242 412 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 RUNDC3AQ59EK9 446 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 REP15Q6BDI9 236 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 TTC33Q6PID6 262 aaPredicted RBP10.98□□□□□ -0.65
CD44-203ENST00000278386 UGT2A3Q6UWM9 527 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 SLC35D2Q76EJ3 337 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 ZNF627Q7L945 461 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 PTOV1Q86YD1 416 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 OR6T1Q8NGN1 323 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 SLC26A7Q8TE54 656 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 ZNF566Q969W8 418 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 THOC1Q96FV9 657 aaKnown RBP10.98□□□□□ -0.65
CD44-203ENST00000278386 MS4A5Q9H3V2 200 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 RABEP2Q9H5N1 569 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 NANSQ9NR45 359 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 GLTPQ9NZD2 209 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 MYEF2Q9P2K5 600 aaKnown RBP10.98□□□□□ -0.65
CD44-203ENST00000278386 SLC7A8Q9UHI5 535 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 DUSP13Q9UII6 198 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 SLC7A7Q9UM01 511 aa10.98□□□□□ -0.65
CD44-203ENST00000278386 MCIDASD6RGH6 385 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 FARS2O95363 451 aaKnown RBP10.97□□□□□ -0.65
CD44-203ENST00000278386 HPXP02790 462 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 VIMP08670 466 aaKnown RBP10.97□□□□□ -0.65
CD44-203ENST00000278386 SAGP10523 405 aaPredicted RBP10.97□□□□□ -0.65
CD44-203ENST00000278386 PCMT1P22061 227 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 SEC24CP53992 1094 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 NFYCQ13952 458 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 NPTX1Q15818 432 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 ZNF74Q16587 644 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 DUSP7Q16829 419 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 NKPD1Q17RQ9 610 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 ALKBH6Q3KRA9 238 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 RGS7BPQ6MZT1 257 aaPredicted RBP10.97□□□□□ -0.65
CD44-203ENST00000278386 TMEM53Q6P2H8 277 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 DLEU7Q6UYE1 221 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 WDR88Q6ZMY6 472 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 PIWIL3Q7Z3Z3 882 aaKnown RBP10.97□□□□□ -0.65
CD44-203ENST00000278386 NANOGNBQ7Z5D8 188 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 GLCCI1Q86VQ1 547 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 LRP11Q86VZ4 500 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 SLC30A8Q8IWU4 369 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 SLC22A24Q8N4F4 322 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 RFLNBQ8N5W9 214 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 GPR32P1Q8NGA4 272 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 OR6X1Q8NH79 312 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 ADAMTS16Q8TE57 1224 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 TMEM54Q969K7 222 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 ATP6V1G3Q96LB4 118 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 ZNF75AQ96N20 296 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 CGREF1Q99674 301 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 OR51B6Q9H340 312 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 RNF121Q9H920 327 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 CDH20Q9HBT6 801 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 LPAR2Q9HBW0 351 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 ZNF346Q9UL40 294 aaKnown RBP10.97□□□□□ -0.65
CD44-203ENST00000278386 NDUFAF1Q9Y375 327 aa10.97□□□□□ -0.65
CD44-203ENST00000278386 TRAPPC13A5PLN9 417 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 M0QX08 132 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 HIST1H2ABP04908 130 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 FAM157BP0CG42 384 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 OR8G3PP0DMU2 310 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 NAT2P11245 290 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 ITGA2P17301 1181 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 CD247P20963 164 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 ACHEP22303 614 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 DVL1P1P54792 670 aaPredicted RBP10.96□□□□□ -0.65
CD44-203ENST00000278386 CLRN1P58418 232 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 FXNQ16595 210 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 TTMPQ5BVD1 217 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 ELFN2Q5R3F8 820 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 NHLRC1Q6VVB1 395 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 HIST3H2AQ7L7L0 130 aa10.96□□□□□ -0.65
CD44-203ENST00000278386 PATL1Q86TB9 770 aaKnown RBP10.96□□□□□ -0.65
CD44-203ENST00000278386 RBM45Q8IUH3 476 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms