RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 ST6GAL1P15907 406 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 MAP3K8P41279 467 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 CBFBQ13951 182 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 ZNHIT3Q15649 155 aaPredicted RBP9.15□□□□□ -0.95
LIG3-201ENST00000262327 HACD4Q5VWC8 232 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 CBLN3Q6UW01 205 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 TMEM92Q6UXU6 159 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 HDDC2Q7Z4H3 204 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 SYS1Q8N2H4 156 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 AVL9Q8NBF6 648 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 SLC2A12Q8TD20 617 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 ATOH1Q92858 354 aaPredicted RBP9.15□□□□□ -0.95
LIG3-201ENST00000262327 LINC00052Q96N35 136 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 GSX2Q9BZM3 304 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 C14orf105Q9NVL8 296 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 FRRS1LQ9P0K9 344 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 BRWD1Q9NSI6 2320 aa9.15□□□□□ -0.95
LIG3-201ENST00000262327 FXYD6-FXYD2A0A087WZ82 144 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 TCRBV16S1A1N1A0A5B0 115 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 F8W036 122 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 GSTZ1O43708 216 aaPredicted RBP9.14□□□□□ -0.95
LIG3-201ENST00000262327 S1PR1P21453 382 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 STARD6P59095 220 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 TAS2R20P59543 309 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 CTXN1P60606 82 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 LGALS3BPQ08380 585 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 ALG11Q2TAA5 492 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 CLLU1Q5K131 121 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 LRFN4Q6PJG9 635 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 SYT13Q7L8C5 426 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 DPY19L4Q7Z388 723 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 CDH26Q8IXH8 852 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 POMGNT2Q8NAT1 580 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 THEM6Q8WUY1 208 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 RNF166Q96A37 237 aaPredicted RBP9.14□□□□□ -0.95
LIG3-201ENST00000262327 CTHRC1Q96CG8 243 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 ACTR6Q9GZN1 396 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 FXYD6Q9H0Q3 95 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 ZCCHC4Q9H5U6 513 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 WDR76Q9H967 626 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 PCDHB16Q9NRJ7 776 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 RXFP3Q9NSD7 469 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 POMT2Q9UKY4 750 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 BAIAP2Q9UQB8 552 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 FANCMQ8IYD8 2048 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 TCRBV21S2A2A0A5A6 115 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 SSX5O60225 188 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 KDM4BO94953 1096 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 ACSM4P0C7M7 580 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 VSIG10L2P0DP72 767 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 RRASP10301 218 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 GABRG2P18507 467 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 ZP2Q05996 745 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 NFATC4Q14934 902 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 PCGF3Q3KNV8 242 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 EXOSC6Q5RKV6 272 aaKnown RBP9.14□□□□□ -0.95
LIG3-201ENST00000262327 LINC01590Q5TEZ4 76 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 CMIPQ8IY22 773 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 OR6N2Q8NGY6 317 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 BAHD1Q8TBE0 780 aaPredicted RBP9.14□□□□□ -0.95
LIG3-201ENST00000262327 LYRM4Q9HD34 91 aa9.14□□□□□ -0.95
LIG3-201ENST00000262327 MRM2Q9UI43 246 aaKnown RBP9.14□□□□□ -0.95
LIG3-201ENST00000262327 PLGP00747 810 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 IGLV3-19P01714 112 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 MAOBP27338 520 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CD226Q15762 336 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 METTL11BQ5VVY1 283 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 UNQ9370/PRO34162Q6UXP9 181 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 GLDNQ6ZMI3 551 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 C3P1Q6ZMU1 363 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 SLC35D2Q76EJ3 337 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 JAZF1Q86VZ6 243 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 PRR22Q8IZ63 422 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 OR51D1Q8NGF3 324 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 OR5AK2Q8NH90 309 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 RBPMSQ93062 196 aaKnown RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 C3orf49Q96BT1 292 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 AMELYQ99218 206 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 CHST6Q9GZX3 395 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 NPDC1Q9NQX5 325 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 CA14Q9ULX7 337 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 C19orf67A6NJJ6 358 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ANXA2P2A6NMY6 339 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 TNFSF14O43557 240 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ITGA10O75578 1167 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 APBB3O95704 486 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 GLAP06280 429 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ANXA2P07355 339 aaKnown RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 HOXC4P09017 264 aaPredicted RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 ART1P52961 327 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 SQSTM1Q13501 440 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ADGRG3Q86Y34 549 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 ZNF676Q8N7Q3 588 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 C16orf52Q8NHV5 167 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 PHOSPHO1Q8TCT1 267 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 SLC37A2Q8TED4 501 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 TMEM106AQ96A25 262 aa9.13□□□□□ -0.95
LIG3-201ENST00000262327 C7orf50Q9BRJ6 194 aaKnown RBP9.13□□□□□ -0.95
LIG3-201ENST00000262327 BCL2L14Q9BZR8 327 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms