RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PDXPQ96GD0 296 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 TUBG2Q9NRH3 451 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 B3GAT1Q9P2W7 334 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ARID1BQ8NFD5 2236 aaPredicted RBP12.5□□□□□ -0.41
SF3A1-201ENST00000215793 CCDC163A0A0D9SF12 145 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 A0A1B0GVG6 124 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 OR2A25A4D2G3 310 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 PRAMEF25A6NGN4 478 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 KLRC4-KLRK1H3BQV0 150 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ALOX12BO75342 701 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 NID1P14543 1247 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 ADPRMQ3LIE5 342 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 GLYATL3Q5SZD4 288 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 DLEU7Q6UYE1 221 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 LINC00346Q8IVM7 164 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SIAH3Q8IW03 269 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 LINC01465Q8N7H1 131 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SEC22AQ96IW7 307 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 SH3BGRL2Q9UJC5 107 aa12.5□□□□□ -0.41
SF3A1-201ENST00000215793 CRYBG1Q9Y4K1 1723 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 NRXN3Q9Y4C0 1643 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 LINC01553A4QN01 128 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ANKRD34BA5PLL1 514 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 PMS2P2O95744 297 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 GNB3P16520 340 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF133P52736 654 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 HTRA3P83110 453 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ATPAF1Q5TC12 328 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 TMEM207Q6UWW9 146 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 CAMKMTQ7Z624 323 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 WFDC5Q8TCV5 224 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 DAPP1Q9UN19 280 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 RFXAPO00287 272 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 LGI1O95970 557 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 THBS1P07996 1170 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 PIPP12273 146 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ELK1P19419 428 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 SRMP19623 302 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ARNTP27540 789 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 FGGYQ96C11 551 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 TEX37Q96LM6 180 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 GPR78Q96P69 363 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 CHST8Q9H2A9 424 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 TCEAL2Q9H3H9 227 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 C19orf53Q9UNZ5 99 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 RPS10-NUDT3A0A1W2PQS6 291 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 GFYI3L273 518 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 FABP7O15540 132 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 PIGAP37287 484 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 LIPAP38571 399 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 RPS10P46783 165 aaKnown RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 MAP2K6P52564 334 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 UBE2KP61086 200 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF266Q14584 549 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 YOD1Q5VVQ6 348 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 RNLSQ5VYX0 342 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 CST9LP1Q5W188 147 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 MDGA2Q7Z553 956 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 SLC37A2Q8TED4 501 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 RNF141Q8WVD5 230 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 Q96M85 177 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 A0A0B4J2A0 478 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 TRABD2BA6NFA1 517 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 RAB4AP20338 218 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 PPT1P50897 306 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 DPTQ07507 201 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 HEPHL1Q6MZM0 1159 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 DHRS4L2Q6PKH6 230 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 SLC51BQ86UW2 128 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 LIPHQ8WWY8 451 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 HSD17B8Q92506 261 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 C3orf49Q96BT1 292 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 MS4A6EQ96DS6 147 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 MRPL38Q96DV4 380 aaKnown RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 C11orf54Q9H0W9 315 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 CALHM2Q9HA72 323 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 GALNT9Q9HCQ5 603 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 FGF22Q9HCT0 170 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 ATP13A2Q9NQ11 1180 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.49□□□□□ -0.41
SF3A1-201ENST00000215793 TM7SF3Q9NS93 570 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 SHPKQ9UHJ6 478 aa12.49□□□□□ -0.41
SF3A1-201ENST00000215793 NANPQ8TBE9 248 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 PRELID3BQ9Y3B1 194 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 PLEKHM1Q9Y4G2 1056 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 I6L893 689 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 NXPH2O95156 264 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 TCN2P20062 427 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 MRPS34P82930 218 aaKnown RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 ZNF750Q32MQ0 723 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 PTCRAQ6ISU1 281 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 ZFP82Q8N141 532 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 GOT1L1Q8NHS2 421 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-201ENST00000215793 OLIG1Q8TAK6 271 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 OR1E3Q8WZA6 343 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 EMC7Q9NPA0 242 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 HMX2A2RU54 273 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 RAB19A4D1S5 217 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 VAMP5O95183 116 aa12.48□□□□□ -0.41
SF3A1-201ENST00000215793 CNR1P21554 472 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms