RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 PCGF1Q9BSM1 259 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR51J1Q9H342 316 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 BCAS3Q9H6U6 928 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 AQRO60306 1485 aaKnown RBP eCLIP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ISM1B1AKI9 464 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SPI1P17947 270 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FBLN1P23142 703 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CD1CP29017 333 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TCTN1Q2MV58 587 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 QRICH1Q2TAL8 776 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 NCEH1Q6PIU2 408 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C10orf126Q8N4M7 172 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CHST14Q8NCH0 376 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR10A6Q8NH74 314 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RNF141Q8WVD5 230 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RDH5Q92781 318 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CMBLQ96DG6 245 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KCTD7Q96MP8 289 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GNRHR2Q96P88 292 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 EBF4Q9BQW3 602 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 WDR83Q9BRX9 315 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KCNK15Q9H427 330 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LHX9Q9NQ69 397 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 B3GAT1Q9P2W7 334 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 THOC2Q8NI27 1593 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 HAS3O00219 553 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 WNT7AO00755 349 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TP53I11O14683 189 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MPDU1O75352 247 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 USP2O75604 605 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CLIC3O95833 236 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C8AP07357 584 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TRAPPC2P0DI81 140 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 TRAPPC2BP0DI82 140 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SLC2A2P11168 524 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 EIF5AL1Q6IS14 154 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LRP10Q7Z4F1 713 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 P2RY8Q86VZ1 359 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PACRGLQ8N7B6 248 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ST8SIA1Q92185 356 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MS4A4AQ96JQ5 239 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CDCA3Q99618 268 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 DDIT4Q9NX09 232 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PURGQ9UJV8 347 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR6A2O95222 327 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FDXRP22570 491 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PSMB6P28072 239 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 EFNA3P52797 238 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZXDCQ2QGD7 858 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FBLN7Q53RD9 439 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 FRMPD2BQ6IN97 320 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 NPSR1Q6W5P4 371 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C1orf186Q6ZWK4 172 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GOLGA7Q7Z5G4 137 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C9orf62Q8N4C0 152 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 OR4P4Q8NGL7 312 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LNX1Q8TBB1 728 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PLEKHF1Q96S99 279 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 C20orf27Q9GZN8 174 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KDM4EB2RXH2 506 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 NPIPB8E9PQR5 432 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ERI3O43414 337 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 PRH1P02810 166 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 HOXD4P09016 255 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 RNH1P13489 461 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 AZU1P20160 251 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CDK3Q00526 305 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ATXN7L3Q14CW9 347 aaPredicted RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 CPSF7Q8N684 471 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SIDT2Q8NBJ9 832 aaKnown RBP3.29□□□□□ -1.88
SCN1A-221ENST00000641996 M1APQ8TC57 530 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 GPBAR1Q8TDU6 330 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 R3HDM4Q96D70 268 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 LXNQ9BS40 222 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 SEMA6CQ9H3T2 930 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF696Q9H7X3 374 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 MANSC1Q9H8J5 431 aa3.29□□□□□ -1.88
SCN1A-221ENST00000641996 KLRC4O43908 158 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ONECUT2O95948 504 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ITGB5P18084 799 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 CEACAM7Q14002 265 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 SLC17A1Q14916 467 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 C22orf42Q6IC83 251 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 Q6ZSR9 355 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 KCTD1Q719H9 257 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 EDAQ92838 391 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ALKBH3Q96Q83 286 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF471Q9BX82 626 aaPredicted RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RHOJQ9H4E5 214 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TXNL4BQ9NX01 149 aaKnown RBP3.28□□□□□ -1.88
SCN1A-221ENST00000641996 RHCGQ9UBD6 479 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 BTRCQ9Y297 605 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 STYXL1Q9Y6J8 313 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 ACACBO00763 2458 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 GLYATL1P3A0A0U1RQE8 302 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 A0A1B0GUH1 482 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 MAP1LC3B2A6NCE7 125 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 FAAHO00519 579 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 TGFB1I1O43294 461 aa3.28□□□□□ -1.88
SCN1A-221ENST00000641996 MT-ND1P03886 318 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms