RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SHISA5Q8N114 240 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR8U1Q8NH10 309 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 PIGCQ92535 297 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RBMXL1Q96E39 390 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SAMD8Q96LT4 415 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SLC35A5Q9BS91 424 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 EBPLQ9BY08 206 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 WWTR1Q9GZV5 400 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CENPMQ9NSP4 180 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 GPATCH2LQ9NWQ4 482 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CGGBP1Q9UFW8 167 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 POLLQ9UGP5 575 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SIRT4Q9Y6E7 314 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DLC1Q96QB1 1528 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 PHRF1Q9P1Y6 1649 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 PLXNA4Q9HCM2 1894 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SLC22A20A6NK97 555 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TRIM77I1YAP6 450 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SOX1O00570 391 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 GPR39O43194 453 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LDB3O75112 727 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 H1F0P07305 194 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 PRRX1P54821 245 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TAS2R45P59539 299 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RPL24P83731 157 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SRYQ05066 204 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR5I1Q13606 314 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 IHHQ14623 411 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ADIRFQ15847 76 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LRRC38Q5VT99 294 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SPRYD7Q5W111 196 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LETMD1Q6P1Q0 360 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LINC00299Q6ZSB3 139 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 LGI4Q8N135 537 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR4E2Q8NGC2 313 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF384Q8TF68 577 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 PINX1Q96BK5 328 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ELP4Q96EB1 424 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TBX5Q99593 518 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TM6SF2Q9BZW4 377 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SLC25A31Q9H0C2 315 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 FAM212BQ9NTI7 297 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 FLRT1Q9NZU1 646 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CNIH4Q9P003 139 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 HSPB2A8KAH6 182 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NPIPB6E9PJ23 425 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 WNT9BO14905 357 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 HBE1P02100 147 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NTF3P20783 257 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 APEX1P27695 318 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TAF10Q12962 218 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TRA2AQ13595 282 aaKnown RBP eCLIP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 HSPB2Q16082 182 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SUSD4Q5VX71 490 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RHBDF2Q6PJF5 856 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OGFOD3Q6PK18 319 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 BBS12Q6ZW61 710 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 EIF4E3Q8N5X7 224 aaKnown RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR56A1Q8NGH5 318 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR2AE1Q8NHA4 323 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TWIST2Q8WVJ9 160 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 UBQLN4Q9NRR5 601 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DNAJC27Q9NZQ0 273 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 DNAJB9Q9UBS3 223 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OAZ3Q9UMX2 235 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 STAB1Q9NY15 2570 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NRKQ7Z2Y5 1582 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 POM121CA8CG34 1229 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 MAFO75444 373 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 AMY2AP04746 511 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 NAGAP17050 411 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ABCD3P28288 659 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 KCNJ10P78508 379 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OLIG2Q13516 323 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 TUSC1Q2TAM9 212 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 MOGAT2Q3SYC2 334 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 BTNL8Q6UX41 500 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 WDR5BQ86VZ2 330 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 CPOQ8IVL8 374 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF695Q8IW36 515 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR2D3Q8NGH3 330 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 OR10X1Q8NGY0 326 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF296Q8WUU4 475 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 EDARADDQ8WWZ3 215 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 SORCS2Q96PQ0 1159 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 HSFX1Q9UBD0 423 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF646O15015 1829 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 COL11A1P12107 1806 aaPredicted RBP2.59□□□□□ -1.99
SCN1A-219ENST00000641575 RGPD2P0DJD1 1756 aa2.59□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1W2PRU2 124 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 KRBA1A5PL33 1030 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 M0R143 59 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PSCAO43653 123 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 TRAF3IP2O43734 574 aaPredicted RBP2.59□□□□□ -2
SCN1A-219ENST00000641575 CALCAP01258 141 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PRF1P14222 555 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 DRD2P14416 443 aa2.59□□□□□ -2
SCN1A-219ENST00000641575 PTBP1P26599 531 aaKnown RBP eCLIP2.59□□□□□ -23e-7■■■■□ 20.5
SCN1A-219ENST00000641575 IL2RGP31785 369 aa2.59□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms