RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC25A36Q96CQ1 311 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 PRDM13Q9H4Q3 707 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 ATAD3AQ9NVI7 634 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 B3GAT1Q9P2W7 334 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 ZNF180Q9UJW8 692 aa12.24□□□□□ -0.45
CLN3-249ENST00000636685 DYNC2H1Q8NCM8 4307 aaKnown RBP12.23□□□□□ -0.45
CLN3-249ENST00000636685 C5orf63A6NC05 138 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 FTCDNL1E5RQL4 147 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 G3V2L1 256 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 SPRY3O43610 288 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 ERLIN1O75477 346 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 IGHV2-70P01814 119 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 LCKP06239 509 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 TFPTP0C1Z6 253 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 CCL2P13500 99 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 SLC6A9P48067 706 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 SLC3A1Q07837 685 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 C1DQ13901 141 aaKnown RBP12.23□□□□□ -0.45
CLN3-249ENST00000636685 MFSD13AQ14CX5 517 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 GSTA3Q16772 222 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 GPAT3Q53EU6 434 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 CLECL1Q8IZS7 167 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 MNS1Q8NEH6 495 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 SPATA4Q8NEY3 305 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 OR10S1Q8NGN2 331 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 FGFBP3Q8TAT2 258 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 MIPOL1Q8TD10 442 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 OXGR1Q96P68 337 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 DCLRE1CQ96SD1 692 aaKnown RBP12.23□□□□□ -0.45
CLN3-249ENST00000636685 DIRC2Q96SL1 478 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 RAB17Q9H0T7 212 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 PATZ1Q9HBE1 687 aaKnown RBP12.23□□□□□ -0.45
CLN3-249ENST00000636685 POFUT2Q9Y2G5 429 aa12.23□□□□□ -0.45
CLN3-249ENST00000636685 A8MXK9 166 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 TMEM114B3SHH9 223 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 H0YL77 283 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 AZIN1O14977 448 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 NPIPB7O75200 414 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 IGHV1-46P01743 117 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 GKN3PP0CG01 181 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 MYL2P10916 166 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 UQCRBP14927 111 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 ZNF81P51508 661 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 RBBP4Q09028 425 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 SPRNQ5BIV9 151 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 CFAP157Q5JU67 520 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 FAM205BPQ63HN1 556 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 RUSC1-AS1Q66K80 236 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 TIFABQ6ZNK6 161 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 ZNF627Q7L945 461 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 C20orf196Q8IYI0 205 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 CADM2Q8N3J6 435 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 NATD1Q8N6N6 113 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 ICA1LQ8NDH6 482 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 ZNF519Q8TB69 540 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 C11orf40Q8WZ69 217 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 UPRTQ96BW1 309 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 NAPGQ99747 312 aaPredicted RBP12.22□□□□□ -0.45
CLN3-249ENST00000636685 DUSP26Q9BV47 211 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 DENND2DQ9H6A0 471 aaPredicted RBP12.22□□□□□ -0.45
CLN3-249ENST00000636685 ZDHHC18Q9NUE0 388 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 EMCNQ9ULC0 261 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 NPTNQ9Y639 398 aa12.22□□□□□ -0.45
CLN3-249ENST00000636685 TM9SF1O15321 606 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 PIP5K1CO60331 668 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 UBL3O95164 117 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 AGR2O95994 175 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 MT-ND5P03915 603 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 SERPINA5P05154 406 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 MYZAPP0CAP1 466 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 DRD4P21917 467 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 HPCAP84074 193 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 CAMK2DQ13557 499 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 FAM209AQ5JX71 171 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 MRPL2Q5T653 305 aaKnown RBP12.21□□□□□ -0.45
CLN3-249ENST00000636685 ATG16L1Q676U5 607 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 ZYG11AQ6WRX3 759 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 Q6YL49 198 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 ZNF620Q6ZNG0 422 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 LCA5Q86VQ0 697 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 RNF130Q86XS8 419 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 SLC30A7Q8NEW0 376 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 MFSD8Q8NHS3 518 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 CCDC126Q96EE4 140 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 C1orf50Q9BV19 199 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 PTDSS2Q9BVG9 487 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 RLIMQ9NVW2 624 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 OR5V1Q9UGF6 321 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 FBXL3Q9UKT7 428 aa12.21□□□□□ -0.45
CLN3-249ENST00000636685 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.21□□□□□ -0.45
CLN3-249ENST00000636685 AHSA1O95433 338 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 OPN1MWP04001 364 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 MELTFP08582 738 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 PPIAL4GP0DN37 164 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 OPN1MW2P0DN77 364 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 OPN1MW3P0DN78 364 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 GTF2E2P29084 291 aaKnown RBP12.2□□□□□ -0.46
CLN3-249ENST00000636685 RPS5P46782 204 aaKnown RBP12.2□□□□□ -0.46
CLN3-249ENST00000636685 NAA20P61599 178 aa12.2□□□□□ -0.46
CLN3-249ENST00000636685 RNF165Q6ZSG1 346 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms