RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 TSC22D1Q15714 1073 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 TSPO2Q5TGU0 170 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 PXKQ7Z7A4 578 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 POMGNT2Q8NAT1 580 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 OR4K5Q8NGD3 323 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 OR13C2Q8NGS9 318 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 FAM46AQ96IP4 442 aaKnown RBP15.69■□□□□ 0.1
CLN3-247ENST00000636351 WFIKKN1Q96NZ8 548 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 ALKBH3Q96Q83 286 aaPredicted RBP15.69■□□□□ 0.1
CLN3-247ENST00000636351 ACTR6Q9GZN1 396 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 MED29Q9NX70 200 aa15.69■□□□□ 0.1
CLN3-247ENST00000636351 TRAV27A0A087WT01 109 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 LOC102725191A0A1B0GVB3 256 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 A0A1W2PRG6 482 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 CIB4A0PJX0 185 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 OR6C65A6NJZ3 312 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 ZNF726A6NNF4 738 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 DEFB108AA8MXU0 73 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 MCIDASD6RGH6 385 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 TNFRSF11BO00300 401 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 OR10H3O60404 316 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 LY6G6DO95868 133 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 IFNGR1P15260 489 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 PSMB1P20618 241 aaKnown RBP15.68■□□□□ 0.1
CLN3-247ENST00000636351 PCYT1AP49585 367 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 ZP4Q12836 540 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 ITGADQ13349 1161 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 P2RY6Q15077 328 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 SEC23BQ15437 767 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 C9orf135Q5VTT2 229 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 BHLHA15Q7RTS1 189 aaPredicted RBP15.68■□□□□ 0.1
CLN3-247ENST00000636351 ABHD12BQ7Z5M8 362 aaPredicted RBP15.68■□□□□ 0.1
CLN3-247ENST00000636351 OAFQ86UD1 273 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 LRRC75A-AS1Q8N1F1 130 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 CIARTQ8N365 385 aaPredicted RBP15.68■□□□□ 0.1
CLN3-247ENST00000636351 STEAP2Q8NFT2 490 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 CANT1Q8WVQ1 401 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 PIK3IP1Q96FE7 263 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 ZC3HAV1LQ96H79 300 aaKnown RBP15.68■□□□□ 0.1
CLN3-247ENST00000636351 COX4I2Q96KJ9 171 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 EMC6Q9BV81 110 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 CHID1Q9BWS9 393 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 NDEL1Q9GZM8 345 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 UBTD1Q9HAC8 227 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 SLC7A10Q9NS82 523 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 TAS2R5Q9NYW4 299 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 MALT1Q9UDY8 824 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 GPR52Q9Y2T5 361 aa15.68■□□□□ 0.1
CLN3-247ENST00000636351 SH3PXD2BA1X283 911 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 FAM171A2A8MVW0 826 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 ZNF587BE7ETH6 402 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 KRT36O76013 467 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 F13BP05160 661 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 COX5AP20674 150 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 IGHV1-2P23083 117 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 IFNGR2P38484 337 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 SLC9A3P48764 834 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 BIDP55957 195 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 LGALS3BPQ08380 585 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 MELKQ14680 651 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 STK11Q15831 433 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 SFRP5Q5T4F7 317 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 OR2T5Q6IEZ7 315 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 ALKBH2Q6NS38 261 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 SLC35D2Q76EJ3 337 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 ASRGL1Q7L266 308 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 GPR137CQ8N3F9 429 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 OR2T29Q8NH02 315 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 OR51A7Q8NH64 312 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 MOSPD2Q8NHP6 518 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 LIPHQ8WWY8 451 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 PIGTQ969N2 578 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 S100PBPQ96BU1 408 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 TXNDC15Q96J42 360 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 OR2M2Q96R28 347 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 HDHD5Q9BXW7 423 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 REEP1Q9H902 201 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 INIPQ9NRY2 104 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 ZNF226Q9NYT6 803 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 TAS2R16Q9NYV7 291 aa15.67■□□□□ 0.1
CLN3-247ENST00000636351 SAMHD1Q9Y3Z3 626 aaKnown RBP15.67■□□□□ 0.1
CLN3-247ENST00000636351 FN1P02751 2386 aaKnown RBP15.67■□□□□ 0.1
CLN3-247ENST00000636351 TCRBV3S1A0A5B6 114 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 SLC35F4A4IF30 521 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 H7C1Q1 480 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 GNGT2O14610 69 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 CLOCKO15516 846 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 RAD51DO75771 328 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 CST1P01037 141 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 PPP3CBP16298 524 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 HOXB6P17509 224 aaKnown RBP15.66■□□□□ 0.1
CLN3-247ENST00000636351 CDH2P19022 906 aaPredicted RBP15.66■□□□□ 0.1
CLN3-247ENST00000636351 DAP3P51398 398 aaKnown RBP15.66■□□□□ 0.1
CLN3-247ENST00000636351 TOP3AQ13472 1001 aaPredicted RBP15.66■□□□□ 0.1
CLN3-247ENST00000636351 CAMK2DQ13557 499 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 ALG10Q5BKT4 473 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 HMBOX1Q6NT76 420 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 IGFN1Q86VF2 1251 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 OR6N1Q8NGY5 312 aa15.66■□□□□ 0.1
CLN3-247ENST00000636351 Q96MF0 132 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms