RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 C5orf46Q6UWT4 87 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 KRT73Q86Y46 540 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 CCDC36Q8IYA8 594 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 ADPRHL1Q8NDY3 354 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 IL17RDQ8NFM7 739 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 MRPL24Q96A35 216 aaKnown RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 TLCD1Q96CP7 247 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 SPDL1Q96EA4 605 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 SPATA5L1Q9BVQ7 753 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 ULBP2Q9BZM5 246 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 NARFLQ9H6Q4 476 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 SLC52A3Q9NQ40 469 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 TCF7L2Q9NQB0 619 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 ZNF224Q9NZL3 707 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 SELENONQ9NZV5 590 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 MYEF2Q9P2K5 600 aaKnown RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 REV1Q9UBZ9 1251 aa13.91□□□□□ -0.18
CLN3-246ENST00000636228 FBXO9Q9UK97 447 aaPredicted RBP13.91□□□□□ -0.18
CLN3-246ENST00000636228 A0A0B4J2E0 115 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 A0A1B0GX12 115 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 ZNF726A6NNF4 738 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 C11orf98E9PRG8 122 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 PLPP3O14495 311 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 SYNGR3O43761 229 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 HPXP02790 462 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 ZNF35P13682 527 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 GIPRP48546 466 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 IDH3AP50213 366 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 CDH15P55291 814 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 NCALDP61601 193 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 RAB1AP62820 205 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 PUDPQ08623 228 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 ELFN2Q5R3F8 820 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 LIPNQ5VXI9 398 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 RINLQ6ZS11 566 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 SMYD1Q8NB12 490 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 FGFBP3Q8TAT2 258 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 HPS1Q92902 700 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 LRR1Q96L50 414 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 TMBIM4Q9HC24 238 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 SLCO1B3Q9NPD5 702 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 B3GAT2Q9NPZ5 323 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 TESQ9UGI8 421 aaKnown RBP13.9□□□□□ -0.18
CLN3-246ENST00000636228 CORINQ9Y5Q5 1042 aa13.9□□□□□ -0.18
CLN3-246ENST00000636228 M0R3H8 397 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 POLR3GO15318 223 aaPredicted RBP13.89□□□□□ -0.19
CLN3-246ENST00000636228 ITGA2P17301 1181 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 SLC6A2P23975 617 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 BIDP55957 195 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 RAB39AQ14964 217 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 TRMT5Q32P41 509 aaKnown RBP13.89□□□□□ -0.19
CLN3-246ENST00000636228 ALKBH6Q3KRA9 238 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 GKAP1Q5VSY0 366 aaPredicted RBP13.89□□□□□ -0.19
CLN3-246ENST00000636228 WDR88Q6ZMY6 472 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 ARMC8Q8IUR7 673 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 OR6S1Q8NH40 331 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 EPYCQ99645 322 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 FOXB1Q99853 325 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 LPAR2Q9HBW0 351 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 MRPL39Q9NYK5 338 aaKnown RBP13.89□□□□□ -0.19
CLN3-246ENST00000636228 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.89□□□□□ -0.19
CLN3-246ENST00000636228 DUSP13Q9UII6 198 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 SLC13A4Q9UKG4 626 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 NOX1Q9Y5S8 564 aa13.89□□□□□ -0.19
CLN3-246ENST00000636228 TRBV5-3A0A0A0MS03 114 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 PRORSD1PA6NEY8 169 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 M0R233 179 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 WNT9BO14905 357 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 TCF21O43680 179 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 MFN2O95140 757 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 RAB36O95755 333 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 OPN1SWP03999 348 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 C8BP07358 591 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 CSNK1A1P48729 337 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 MRPL19P49406 292 aaKnown RBP13.88□□□□□ -0.19
CLN3-246ENST00000636228 AGKQ53H12 422 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 PXKQ7Z7A4 578 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 SKA3Q8IX90 412 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 SCAIQ8N9R8 606 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 ZNF607Q96SK3 696 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 MCHR1Q99705 422 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 TMEM38AQ9H6F2 299 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 SPEF1Q9Y4P9 236 aa13.88□□□□□ -0.19
CLN3-246ENST00000636228 CPSF4LA6NMK7 179 aaKnown RBP13.87□□□□□ -0.19
CLN3-246ENST00000636228 SERPINB7O75635 380 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 ADORA3P0DMS8 318 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 NAT2P11245 290 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 GPX2P18283 190 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 PPIBP23284 216 aaKnown RBP13.87□□□□□ -0.19
CLN3-246ENST00000636228 GLRXP35754 106 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 EVX1P49640 407 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 GALK2Q01415 458 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 MELKQ14680 651 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 NPTX1Q15818 432 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 FXNQ16595 210 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 DUSP7Q16829 419 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 ZNF627Q7L945 461 aa13.87□□□□□ -0.19
CLN3-246ENST00000636228 RANBP3LQ86VV4 465 aaPredicted RBP13.87□□□□□ -0.19
CLN3-246ENST00000636228 RBM45Q8IUH3 476 aaKnown RBP13.87□□□□□ -0.19
CLN3-246ENST00000636228 ZNF584Q8IVC4 421 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms