RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 CCDC124Q96CT7 223 aaKnown RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 SLC25A44Q96H78 314 aaPredicted RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 CLPTM1LQ96KA5 538 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 SEPHS2Q99611 448 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 OBP2BQ9NPH6 170 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 HIF3AQ9Y2N7 669 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 MAGED1Q9Y5V3 778 aaPredicted RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 SLC25A15Q9Y619 301 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 MCIDASD6RGH6 385 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 GADD45GO95257 159 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 WNT11O96014 354 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 F13BP05160 661 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 MAKP20794 623 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 PAX7P23759 505 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 LOXP28300 417 aaPredicted RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 CSNK1A1P48729 337 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 DAP3P51398 398 aaKnown RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 MS4A2Q01362 244 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 SPIBQ01892 262 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 TRAP1Q12931 704 aaKnown RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 LAPTM4AQ15012 233 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 NCMAPQ5T1S8 102 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 ANKRD16Q6P6B7 361 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 TMPRSS11FQ6ZWK6 438 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 LINGO2Q7L985 606 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 OAFQ86UD1 273 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 ZNF566Q969W8 418 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 DHRS1Q96LJ7 313 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 HS3ST6Q96QI5 342 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 TRIM15Q9C019 465 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 STX18Q9P2W9 335 aaKnown RBP18.17■□□□□ 0.5
CLN3-240ENST00000631023 ST6GALNAC2Q9UJ37 374 aa18.17■□□□□ 0.5
CLN3-240ENST00000631023 A0A1W2PPR1 153 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 CLOCKO15516 846 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 ATP5HO75947 161 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 CD3EP07766 207 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 HOXB1P14653 301 aaPredicted RBP18.16■□□□□ 0.5
CLN3-240ENST00000631023 BNIP1Q12981 228 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 CEACAM16Q2WEN9 425 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 ALG10Q5BKT4 473 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 PIWIL3Q7Z3Z3 882 aaKnown RBP18.16■□□□□ 0.5
CLN3-240ENST00000631023 OR52J3Q8NH60 311 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 MOSPD2Q8NHP6 518 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 NINJ1Q92982 152 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 SLC7A6OSQ96CW6 309 aaPredicted RBP18.16■□□□□ 0.5
CLN3-240ENST00000631023 ULBP2Q9BZM5 246 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 MAGIXQ9H6Y5 334 aa18.16■□□□□ 0.5
CLN3-240ENST00000631023 A0A1W2PR80 420 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 DNAJC8O75937 253 aaPredicted RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 DNASE1P24855 282 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 GPR4P46093 362 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 UBE2NP61088 152 aaKnown RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 ARF1P84077 181 aaKnown RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 CHRNB3Q05901 458 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 TAF11Q15544 211 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 TBRG1Q3YBR2 411 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 FAM98BQ52LJ0 330 aaKnown RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 HIKESHIQ53FT3 197 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 SEZ6L2Q6UXD5 910 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 TMEM108Q6UXF1 575 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 ZNF704Q6ZNC4 412 aaPredicted RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 WDR31Q8NA23 367 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 OR51A7Q8NH64 312 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 MAGEE2Q8TD90 523 aaPredicted RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 BCL2L2Q92843 193 aaPredicted RBP18.15■□□□□ 0.5
CLN3-240ENST00000631023 NDEL1Q9GZM8 345 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 LIME1Q9H400 295 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 GLTPQ9NZD2 209 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 RNF115Q9Y4L5 304 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 ARID1AO14497 2285 aa18.15■□□□□ 0.5
CLN3-240ENST00000631023 RAI1Q7Z5J4 1906 aaPredicted RBP18.14■□□□□ 0.5
CLN3-240ENST00000631023 TRBV4-1A0A0J9YWV2 114 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 TCRBV5S2A0A599 114 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 NPIPB13A6NJU9 1138 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 ZNF99A8MXY4 864 aaPredicted RBP18.14■□□□□ 0.49
CLN3-240ENST00000631023 NPIPB4C9JG80 1138 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 KRT36O76013 467 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 IGHG1P01857 330 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 RPS4XP62701 263 aaKnown RBP18.14■□□□□ 0.49
CLN3-240ENST00000631023 BSPH1Q075Z2 132 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 MELKQ14680 651 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 PHYHD1Q5SRE7 291 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 PAMR1Q6UXH9 720 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 MEX3DQ86XN8 651 aaKnown RBP18.14■□□□□ 0.49
CLN3-240ENST00000631023 TMEM54Q969K7 222 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 TNFRSF13CQ96RJ3 184 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 TMEM204Q9BSN7 226 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 TMCC3Q9ULS5 477 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 AURKCQ9UQB9 309 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 POFUT2Q9Y2G5 429 aa18.14■□□□□ 0.49
CLN3-240ENST00000631023 DPRXA6NFQ7 191 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 CENPBD1B2RD01 187 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 RAF1P04049 648 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 RRM2P31350 389 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ZNF83P51522 516 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 CLRN1P58418 232 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 KEAP1Q14145 624 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 ACKR1Q16570 336 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 CCDC36Q8IYA8 594 aa18.13■□□□□ 0.49
CLN3-240ENST00000631023 OR4K5Q8NGD3 323 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms