RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 GPX7Q96SL4 187 aaPredicted RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 PTDSS2Q9BVG9 487 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 TMED7Q9Y3B3 224 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 PCDHGB7Q9Y5F8 929 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 HRH3Q9Y5N1 445 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 FADS1O60427 444 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 DOK2O60496 412 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 FZD7O75084 574 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 ADRB1P08588 477 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 GALP22466 123 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 TALDO1P37837 337 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 PNLIPRP2P54317 469 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 CBFBQ13951 182 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 NDUFA5Q16718 116 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 MEP1BQ16820 701 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 RPL22L1Q6P5R6 122 aaKnown RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 PRSS45Q7RTY3 260 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 SERPINA12Q8IW75 414 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 SYS1Q8N2H4 156 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 BMPERQ8N8U9 685 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 ZNF441Q8N8Z8 693 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 EXD3Q8N9H8 876 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 OR51A4Q8NGJ6 313 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 METTL21AQ8WXB1 218 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 PPP1R14AQ96A00 147 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 ARL5BQ96KC2 179 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 CCDC74BQ96LY2 380 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 IER2Q9BTL4 223 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 SMOC1Q9H4F8 434 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 DDX28Q9NUL7 540 aaKnown RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 SEMA5BQ9P283 1151 aa9.61□□□□□ -0.87
CUX1-221ENST00000622516 MRM2Q9UI43 246 aaKnown RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 PRRC2CQ9Y520 2896 aaKnown RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 URB1O60287 2271 aaKnown RBP9.61□□□□□ -0.87
CUX1-221ENST00000622516 TRBV11-1A0A0K0K1C0 115 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 LOC105371267A0A1B0GV96 52 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FAM240BA0A1B0GVZ2 78 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 TNFRSF10AO00220 468 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 LYRM1O43325 122 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 BGLAPP02818 100 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 CD3GP09693 182 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 EPXP11678 715 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 PGCP20142 388 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FOXK1P85037 733 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ACKR1Q16570 336 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 STPG1Q5TH74 334 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 PAPD4Q6PIY7 484 aaKnown RBP9.6□□□□□ -0.87
CUX1-221ENST00000622516 DNAAF1Q8NEP3 725 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 OR5M1Q8NGP8 315 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 OR6F1Q8NGZ6 308 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 OR10AC1Q8NH08 325 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FYTTD1Q96QD9 318 aaKnown RBP9.6□□□□□ -0.87
CUX1-221ENST00000622516 THAP7Q9BT49 309 aaPredicted RBP9.6□□□□□ -0.87
CUX1-221ENST00000622516 CYSLTR2Q9NS75 346 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 KCNG2Q9UJ96 466 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 LAMP5Q9UJQ1 280 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 EML6Q6ZMW3 1958 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 TEX51A0A1B0GUA7 166 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 H3BML4 177 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FLRT2O43155 660 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 IDH3BO43837 385 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 MPZL1O95297 269 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 SRMP19623 302 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 MAP2K3P46734 347 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 SLC6A8P48029 635 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 P2RX1P51575 399 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 NR0B2Q15466 257 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 TBRG1Q3YBR2 411 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 HSD17B12Q53GQ0 312 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ATAD3CQ5T2N8 411 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 PLET1Q6UQ28 207 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 LRRC28Q86X40 367 aaPredicted RBP9.6□□□□□ -0.87
CUX1-221ENST00000622516 TIGD4Q8IY51 512 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 SLC43A2Q8N370 569 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 PLPP5Q8NEB5 264 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ZNF417Q8TAU3 575 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ZNF671Q8TAW3 534 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 CHAC2Q8WUX2 184 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ZNF587Q96SQ5 575 aaPredicted RBP9.6□□□□□ -0.87
CUX1-221ENST00000622516 TMEM185BQ9H7F4 350 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 RNF121Q9H920 327 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 TAS2R10Q9NYW0 307 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FRRS1LQ9P0K9 344 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 RARRES3Q9UL19 164 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 GTF2A1LQ9UNN4 478 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 NUP210LQ5VU65 1888 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 TRAV36DV7A0A075B6V5 113 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 A0A1B0GTQ1 180 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 MASP2O00187 686 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 TO15178 435 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 SLC16A7O60669 478 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 SLC19A2O60779 497 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 ALOX12BO75342 701 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 GAAP10253 952 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 EMP2P54851 167 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 CD83Q01151 205 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 SLC35D3Q5M8T2 416 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 C1orf140Q5VVS0 124 aa9.6□□□□□ -0.87
CUX1-221ENST00000622516 FIP1L1Q6UN15 594 aaKnown RBP9.6□□□□□ -0.87
CUX1-221ENST00000622516 LRRN1Q6UXK5 716 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms