RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 ADA2Q9NZK5 511 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 GMPR2Q9P2T1 348 aaKnown RBP16.5■□□□□ 0.23
CDX1-202ENST00000616154 B3GAT1Q9P2W7 334 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 FKBP7Q9Y680 259 aa16.5■□□□□ 0.23
CDX1-202ENST00000616154 TRAV36DV7A0A075B6V5 113 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 IGHV1-18A0A0C4DH31 117 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 OR6C65A6NJZ3 312 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 VWC2LB2RUY7 222 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 ZNF587BE7ETH6 402 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 KRT33AO76009 404 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 CD247P20963 164 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 PDLIM4P50479 330 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 SNRPD2P62316 118 aaKnown RBP16.49■□□□□ 0.23
CDX1-202ENST00000616154 LSM11P83369 360 aaKnown RBP eCLIP16.49■□□□□ 0.23
CDX1-202ENST00000616154 OR1Q1Q15612 314 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 TMEM225Q6GV28 225 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 ERICH5Q6P6B1 374 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 ZNF613Q6PF04 617 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 LINC00114Q6XXX2 140 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 RANBP3LQ86VV4 465 aaPredicted RBP16.49■□□□□ 0.23
CDX1-202ENST00000616154 SMYD1Q8NB12 490 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 OR2T12Q8NG77 320 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 TAAR8Q969N4 342 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 UTP4Q969X6 686 aaKnown RBP16.49■□□□□ 0.23
CDX1-202ENST00000616154 TAMM41Q96BW9 452 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 SLC41A3Q96GZ6 507 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 TMEM43Q9BTV4 400 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 PRR14Q9BWN1 585 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 BEX2Q9BXY8 128 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 TMEM27Q9HBJ8 222 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 SLC13A4Q9UKG4 626 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 USP22Q9UPT9 525 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 RCE1Q9Y256 329 aa16.49■□□□□ 0.23
CDX1-202ENST00000616154 NDUFS8O00217 210 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 RPS5P46782 204 aaKnown RBP16.48■□□□□ 0.23
CDX1-202ENST00000616154 GZMKP49863 264 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 SELENOPP49908 381 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 MFSD13AQ14CX5 517 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 NPTX1Q15818 432 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 MICU2Q8IYU8 434 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 CLPTM1LQ96KA5 538 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 SORCS2Q96PQ0 1159 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 ALKBH3Q96Q83 286 aaPredicted RBP16.48■□□□□ 0.23
CDX1-202ENST00000616154 KCNS3Q9BQ31 491 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 KATNB1Q9BVA0 655 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 LINC00470Q9BZP3 86 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 CRNNQ9UBG3 495 aaPredicted RBP16.48■□□□□ 0.23
CDX1-202ENST00000616154 CORINQ9Y5Q5 1042 aa16.48■□□□□ 0.23
CDX1-202ENST00000616154 ARPC4-TTLL3A0A0A6YYG9 625 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 ELOVL7A1L3X0 281 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 ERICH4A6NGS2 130 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 ZNF432O94892 652 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 CRYAAP02489 173 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 CDH12P55289 794 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 UBE2NP61088 152 aaKnown RBP16.47■□□□□ 0.23
CDX1-202ENST00000616154 LGALS3BPQ08380 585 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 C3orf36Q3SXR2 165 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 LINGO2Q7L985 606 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 RNF148Q8N7C7 305 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 SCAIQ8N9R8 606 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 ANKK1Q8NFD2 765 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 OR6T1Q8NGN1 323 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 MAGEE2Q8TD90 523 aaPredicted RBP16.47■□□□□ 0.23
CDX1-202ENST00000616154 RASSF5Q8WWW0 418 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 BCL2L2Q92843 193 aaPredicted RBP16.47■□□□□ 0.23
CDX1-202ENST00000616154 EPYCQ99645 322 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 KCTD14Q9BQ13 255 aaPredicted RBP16.47■□□□□ 0.23
CDX1-202ENST00000616154 PIMREGQ9BSJ6 248 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 SHARPINQ9H0F6 387 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 CA10Q9NS85 328 aa16.47■□□□□ 0.23
CDX1-202ENST00000616154 M0R082 166 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 M0R3H8 397 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 CHP2O43745 196 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 LMX1BO60663 402 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 UPK3AO75631 287 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 PDE5AO76074 875 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 LYPD3O95274 346 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 BGLAPP02818 100 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 OPN1SWP03999 348 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 THBS2P35442 1172 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 SERPINF1P36955 418 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 NR4A2P43354 598 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 NIPAL3Q6P499 406 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 NHLRC1Q6VVB1 395 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 H1FNTQ75WM6 255 aaPredicted RBP16.46■□□□□ 0.23
CDX1-202ENST00000616154 OR4D11Q8NGI4 311 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 ZNF417Q8TAU3 575 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 MCUR1Q96AQ8 359 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 OXGR1Q96P68 337 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 ZNF587Q96SQ5 575 aaPredicted RBP16.46■□□□□ 0.23
CDX1-202ENST00000616154 MCHR1Q99705 422 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 ZNF426Q9BUY5 554 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 NELFAQ9H3P2 528 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 MUC13Q9H3R2 512 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 MOV10Q9HCE1 1003 aaKnown RBP16.46■□□□□ 0.23
CDX1-202ENST00000616154 MYOZ1Q9NP98 299 aaPredicted RBP16.46■□□□□ 0.23
CDX1-202ENST00000616154 SELENONQ9NZV5 590 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 SEC14L4Q9UDX3 406 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 SLC7A8Q9UHI5 535 aa16.46■□□□□ 0.23
CDX1-202ENST00000616154 B9A039 149 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms