RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 LIME1Q9H400 295 aa17.1■□□□□ 0.33
SHKBP1-221ENST00000599833 SLC17A5Q9NRA2 495 aa17.1■□□□□ 0.33
SHKBP1-221ENST00000599833 SLC7A8Q9UHI5 535 aa17.1■□□□□ 0.33
SHKBP1-221ENST00000599833 POMPQ9Y244 141 aa17.1■□□□□ 0.33
SHKBP1-221ENST00000599833 FAM32AQ9Y421 112 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-221ENST00000599833 TRAV27A0A087WT01 109 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 RNF13O43567 381 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 SERPINI2O75830 405 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 IGHMP01871 453 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 PGA4P0DJD7 388 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 PGA3P0DJD8 388 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 IL1RL1Q01638 556 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 ZER1Q7Z7L7 766 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 P2RY8Q86VZ1 359 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 WFDC8Q8IUA0 241 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 OR4K5Q8NGD3 323 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 OR52J3Q8NH60 311 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 NMD3Q96D46 503 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 FAM46AQ96IP4 442 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 TNFRSF13CQ96RJ3 184 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 POLDIP3Q9BY77 421 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 LYVE1Q9Y5Y7 322 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 PLCE1Q9P212 2302 aa17.09■□□□□ 0.33
SHKBP1-221ENST00000599833 DPRXA6NFQ7 191 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 AQP12BA6NM10 295 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 EFCAB9A8MZ26 197 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF587BE7ETH6 402 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 CLOCKO15516 846 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 AKAP8O43823 692 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 GADD45GO95257 159 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 PLAUP00749 431 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 HIST1H2ABP04908 130 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 SLC9A3P48764 834 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 SPIBQ01892 262 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 PPA1Q15181 289 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ACKR1Q16570 336 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 CEACAM16Q2WEN9 425 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 HIKESHIQ53FT3 197 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 BEX5Q5H9J7 111 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 FGD3Q5JSP0 725 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 CARD17Q5XLA6 110 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 OR7E24Q6IFN5 339 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF770Q6IQ21 691 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ASRGL1Q7L266 308 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 HIST3H2AQ7L7L0 130 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF627Q7L945 461 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 AQP12AQ8IXF9 295 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 C17orf78Q8N4C9 275 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 HIST1H2ACQ93077 130 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 PIK3IP1Q96FE7 263 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ADAD1Q96M93 576 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF347Q96SE7 839 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 LRMDAQ9H2I8 198 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 INIPQ9NRY2 104 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 SIGLEC7Q9Y286 467 aa17.08■□□□□ 0.32
SHKBP1-221ENST00000599833 A0A1W2PR80 420 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 TCRBV3S1A0A5B6 114 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF503-AS2A6NEH8 195 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 M0R3G1 203 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 CASKO14936 926 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 OR6A2O95222 327 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF133P52736 654 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 STK11Q15831 433 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 ALG10Q5BKT4 473 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 NCMAPQ5T1S8 102 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 LRFN4Q6PJG9 635 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 OR52N5Q8NH56 324 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 OR51A7Q8NH64 312 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 LILRB1Q8NHL6 650 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF519Q8TB69 540 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 MAGEE2Q8TD90 523 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 CANT1Q8WVQ1 401 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 UTP4Q969X6 686 aaKnown RBP17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 MCUR1Q96AQ8 359 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 SLCO4A1Q96BD0 722 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 PLPPR2Q96GM1 343 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 SLC25A44Q96H78 314 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 CRLF2Q9HC73 371 aa17.07■□□□□ 0.32
SHKBP1-221ENST00000599833 CIB4A0PJX0 185 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 MCIDASD6RGH6 385 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ATP5HO75947 161 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 SAGP10523 405 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ARF1P84077 181 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 TBRG1Q3YBR2 411 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ANKDD1AQ495B1 522 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 THSD4Q6ZMP0 1018 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 FAM122BQ7Z309 247 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ABHD12BQ7Z5M8 362 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 OAFQ86UD1 273 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 IGFN1Q86VF2 1251 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 HDAC2Q92769 488 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ALPK1Q96QP1 1244 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 TSPAN32Q96QS1 320 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 TXNIPQ9H3M7 391 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ZNF224Q9NZL3 707 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 TMEM5Q9Y2B1 443 aa17.06■□□□□ 0.32
SHKBP1-221ENST00000599833 ARPC4-TTLL3A0A0A6YYG9 625 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 TRMUO75648 421 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 BCL10O95999 233 aa17.05■□□□□ 0.32
SHKBP1-221ENST00000599833 RAP2AP10114 183 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms