RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 HCFC1P51610 2035 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 NBEAL2Q6ZNJ1 2754 aa8.4□□□□□ -1.06
TRIM28-208ENST00000597172 LOC102725191A0A1B0GVB3 256 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 OR14I1A6ND48 311 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 AQP7P3A6NL99 342 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 KDM4EB2RXH2 506 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 C11orf98E9PRG8 122 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 H0YAE9 185 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 SMAD9O15198 467 aaKnown RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 RNF13O43567 381 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 DNPH1O43598 174 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 EIF1BO60739 113 aaKnown RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CLIC3O95833 236 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 F13BP05160 661 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 GNAO1P09471 354 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 HLA-DOBP13765 273 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CDH2P19022 906 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 HOXC12P31275 282 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CAPGP40121 348 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 NUP107P57740 925 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CTXN1P60606 82 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 PRPS1P60891 318 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 EFNB1P98172 346 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ALG10Q5BKT4 473 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 EMC4Q5J8M3 183 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CLEC12AQ5QGZ9 265 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF362Q5T0B9 420 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 PDSS1Q5T2R2 415 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 SLX4IPQ5VYV7 408 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 C12orf73Q69YU5 71 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ARHGAP11AQ6P4F7 1023 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 DPY19L2P2Q6ZN68 376 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 USP51Q70EK9 711 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 NANOGNBQ7Z5D8 188 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ADGRE4PQ86SQ3 457 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 WDFY1Q8IWB7 410 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 DMRTC2Q8IXT2 367 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 GHDCQ8N2G8 530 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ADPRHL1Q8NDY3 354 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 FANK1Q8TC84 345 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ZPLD1Q8TCW7 415 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CYGBQ8WWM9 190 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 UBE2FQ969M7 185 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 SARAFQ96BY9 339 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF570Q96NI8 536 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 GPX7Q96SL4 187 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 PITX2Q99697 317 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 TUBA1CQ9BQE3 449 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 NAA11Q9BSU3 229 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 POLDIP3Q9BY77 421 aaKnown RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 SLC25A19Q9HC21 320 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 NRIP3Q9NQ35 241 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 ING1Q9UK53 422 aaPredicted RBP8.39□□□□□ -1.07
TRIM28-208ENST00000597172 RAB26Q9ULW5 256 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 CAMK2AQ9UQM7 478 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 MEMO1Q9Y316 297 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 IER3IP1Q9Y5U9 82 aa8.39□□□□□ -1.07
TRIM28-208ENST00000597172 A0A1W2PNV4 684 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 KCNAB3O43448 404 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 DENRO43583 198 aaKnown RBP8.38□□□□□ -1.07
TRIM28-208ENST00000597172 AQP8O94778 261 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 OR6A2O95222 327 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 SLC2A10O95528 541 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 PPP1R3DO95685 299 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 CD14P08571 375 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 AHCYP23526 432 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 GTF2E2P29084 291 aaKnown RBP8.38□□□□□ -1.07
TRIM28-208ENST00000597172 SLC6A6P31641 620 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 NTF4P34130 210 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 GGT2P36268 569 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 RPS3AP61247 264 aaKnown RBP8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ERVK-25P63136 954 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 MYBPC1Q00872 1141 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 PUDPQ08623 228 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 SLC17A1Q14916 467 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 WLSQ5T9L3 541 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TTC23Q5W5X9 447 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TMEM225Q6GV28 225 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 RPL13AP3Q6NVV1 102 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 SLC27A4Q6P1M0 643 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 FAM122BQ7Z309 247 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 PXKQ7Z7A4 578 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 SLC43A2Q8N370 569 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 LNX2Q8N448 690 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ZIC4Q8N9L1 334 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 ZNF555Q8NEP9 628 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 OR2T33Q8NG76 320 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 OR5M9Q8NGP3 310 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TEX47Q8TBZ9 253 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 CPNE4Q96A23 557 aaPredicted RBP8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TXNDC15Q96J42 360 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 MUS81Q96NY9 551 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 OXGR1Q96P68 337 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TSPAN32Q96QS1 320 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 DDOQ99489 341 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 KATNB1Q9BVA0 655 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 IFT27Q9BW83 186 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 TIGARQ9NQ88 270 aa8.38□□□□□ -1.07
TRIM28-208ENST00000597172 NPDC1Q9NQX5 325 aaPredicted RBP8.38□□□□□ -1.07
TRIM28-208ENST00000597172 INIPQ9NRY2 104 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms