RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CCDC159P0C7I6 412 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 CDKN2AP42771 156 aaKnown RBP13.06□□□□□ -0.32
VRK3-212ENST00000596814 BIDP55957 195 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 LCN6P62502 163 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 AADACL4Q5VUY2 407 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 NHLRC1Q6VVB1 395 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 CREB3L2Q70SY1 520 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 GID4Q8IVV7 300 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 FNDC9Q8TBE3 224 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 ZPLD1Q8TCW7 415 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 RNF128Q8TEB7 428 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 ABHD3Q8WU67 409 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 TXNDC15Q96J42 360 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 YTHDF1Q9BYJ9 559 aaKnown RBP13.06□□□□□ -0.32
VRK3-212ENST00000596814 PRRG4Q9BZD6 226 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 MED20Q9H944 212 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 BLOC1S6Q9UL45 172 aa13.06□□□□□ -0.32
VRK3-212ENST00000596814 SPENQ96T58 3664 aaKnown RBP13.06□□□□□ -0.32
VRK3-212ENST00000596814 SNTNA6NMZ2 147 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 ZNF716A6NP11 495 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 ZNHIT1O43257 154 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 PRODHO43272 600 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 XPNPEP2O43895 674 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 TDGF1P3P51864 188 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 SLC16A1P53985 500 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 CDH11P55287 796 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 CLDN17P56750 224 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 RASGEF1BQ0VAM2 473 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 NIPAL3Q6P499 406 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 BBS1Q8NFJ9 593 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 OR5M9Q8NGP3 310 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 OR9Q1Q8NGQ5 310 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 RFKQ969G6 155 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 SNRNP40Q96DI7 357 aaKnown RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 CNTNAP3BQ96NU0 1288 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 SNX18Q96RF0 628 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 DDOQ99489 341 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 EMC6Q9BV81 110 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 HCAR1Q9BXC0 346 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 CNTNAP3Q9BZ76 1288 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 SCN3BQ9NY72 215 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 H2AFY2Q9P0M6 372 aaPredicted RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 KLHL9Q9P2J3 617 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 ZNF175Q9Y473 711 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 PRRC2CQ9Y520 2896 aaKnown RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 PRSS37A4D1T9 235 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 OR6C68A6NDL8 312 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 AKAP8O43823 692 aaKnown RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 LYNP07948 512 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 CRHBPP24387 322 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 PTGS2P35354 604 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 CSNK2BP67870 215 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 RUNX1T1Q06455 604 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 LY6DQ14210 128 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 KCTD21Q4G0X4 260 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 PRR30Q53SZ7 412 aaPredicted RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 PLXDC2Q6UX71 529 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 FGD2Q7Z6J4 655 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 OR6X1Q8NH79 312 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 PTP4A1Q93096 173 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 ADAD1Q96M93 576 aaKnown RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 SLX1AQ9BQ83 275 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 SYT4Q9H2B2 425 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 ZNF696Q9H7X3 374 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 AMBNQ9NP70 447 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 RPRD1BQ9NQG5 326 aaKnown RBP13.05□□□□□ -0.32
VRK3-212ENST00000596814 PLCXD1Q9NUJ7 323 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.05□□□□□ -0.32
VRK3-212ENST00000596814 TPRKBQ9Y3C4 175 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 FLVCR1Q9Y5Y0 555 aa13.05□□□□□ -0.32
VRK3-212ENST00000596814 ALPK2Q86TB3 2170 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 SLC35F4A4IF30 521 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 SLC22A20A6NK97 555 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 ZNF726A6NNF4 738 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 TRMUO75648 421 aaKnown RBP13.04□□□□□ -0.32
VRK3-212ENST00000596814 AQP8O94778 261 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 IGHG1P01857 330 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 CLUP10909 449 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 FCGR2AP12318 317 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 SLC25A1P53007 311 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 ZNF91Q05481 1191 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 RNPS1Q15287 305 aaKnown RBP13.04□□□□□ -0.32
VRK3-212ENST00000596814 KLHL12Q53G59 568 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 WDFY1Q8IWB7 410 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 NOXO1Q8NFA2 376 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 SLC25A44Q96H78 314 aaPredicted RBP13.04□□□□□ -0.32
VRK3-212ENST00000596814 ZNF385AQ96PM9 386 aaKnown RBP13.04□□□□□ -0.32
VRK3-212ENST00000596814 KCNK17Q96T54 332 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 NMNAT2Q9BZQ4 307 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 OR51V1Q9H2C8 321 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 ASF1BQ9NVP2 202 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 VSX1Q9NZR4 365 aaPredicted RBP13.04□□□□□ -0.32
VRK3-212ENST00000596814 EMC3Q9P0I2 261 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 CLCF1Q9UBD9 225 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 RPL36Q9Y3U8 105 aaKnown RBP13.04□□□□□ -0.32
VRK3-212ENST00000596814 ITPR1Q14643 2758 aa13.04□□□□□ -0.32
VRK3-212ENST00000596814 SPTA1P02549 2419 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 GTF3C1Q12789 2109 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 IGKV3D-15A0A087WSY6 115 aa13.03□□□□□ -0.32
VRK3-212ENST00000596814 SLC22A23A1A5C7 686 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms