RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 HOPXQ9BPY8 73 aaPredicted RBP13.3□□□□□ -0.28
TRIM28-203ENST00000593582 PRSS27Q9BQR3 290 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 ULBP2Q9BZM5 246 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 EFCAB1Q9HAE3 211 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 CMTM6Q9NX76 183 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 TAS2R5Q9NYW4 299 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 RIMS3Q9UJD0 308 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 POFUT2Q9Y2G5 429 aa13.3□□□□□ -0.28
TRIM28-203ENST00000593582 SEC14L2O76054 403 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 IGKV3-15P01624 115 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 IGLV1-44P01699 117 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 MT-ND1P03886 318 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 ASAH2BP0C7U1 165 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 CECR9P0C854 216 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 THRBP10828 461 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 IFNA8P32881 189 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 ARR3P36575 388 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 NUDT6P53370 316 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 SELENOWP63302 87 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 NAAAQ02083 359 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 LIPEQ05469 1076 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 SLC35D2Q76EJ3 337 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 NANOGNBQ7Z5D8 188 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 SLC15A3Q8IY34 581 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 OR6X1Q8NH79 312 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 TMEM239Q8WW34 195 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 POM121Q96HA1 1249 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 ELAC2Q9BQ52 826 aaKnown RBP13.29□□□□□ -0.28
TRIM28-203ENST00000593582 MEPEQ9NQ76 525 aaPredicted RBP13.29□□□□□ -0.28
TRIM28-203ENST00000593582 PMF1-BGLAPU3KQ54 211 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 ZANQ9Y493 2812 aa13.29□□□□□ -0.28
TRIM28-203ENST00000593582 PLCE1Q9P212 2302 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 RNF223E7ERA6 249 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 BLOC1S5-TXNDC5H3BN57 136 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 H7C417 338 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 NDUFAB1O14561 156 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 GSTA4O15217 222 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 SSX4O60224 188 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 IDH3GP51553 393 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-203ENST00000593582 SLC7A2P52569 658 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 NPRL3Q12980 569 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF813Q6ZN06 617 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 MDP1Q86V88 176 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 NKAIN4Q8IVV8 208 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 OR4F15Q8NGB8 312 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 TMEM255BQ8WV15 326 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 ZNF566Q969W8 418 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 CMTM5Q96DZ9 223 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 FBXO17Q96EF6 278 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 FAM107BQ9H098 131 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 CA10Q9NS85 328 aa13.28□□□□□ -0.28
TRIM28-203ENST00000593582 BCL10O95999 233 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 IGF2P01344 180 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 CELA3BP08861 270 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 CD79AP11912 226 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 HOXB4P17483 251 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-203ENST00000593582 FUT1P19526 365 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 SERPINF1P36955 418 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 NUDT2P50583 147 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 SEC24CP53992 1094 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 UGT2B15P54855 530 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 ST3GAL3Q11203 375 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 HACD2Q6Y1H2 254 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 DNM1P46Q6ZS02 220 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF627Q7L945 461 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 SLC46A3Q7Z3Q1 461 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 TREML1Q86YW5 311 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 WDFY1Q8IWB7 410 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 IL17RDQ8NFM7 739 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 PFN4Q8NHR9 129 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 NANOS1Q8WY41 292 aaKnown RBP13.27□□□□□ -0.29
TRIM28-203ENST00000593582 SGTBQ96EQ0 304 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 SLC25A44Q96H78 314 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-203ENST00000593582 FOXB1Q99853 325 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 REG4Q9BYZ8 158 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 NSRP1Q9H0G5 558 aaKnown RBP13.27□□□□□ -0.29
TRIM28-203ENST00000593582 GLTPQ9NZD2 209 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 MED31Q9Y3C7 131 aa13.27□□□□□ -0.29
TRIM28-203ENST00000593582 A0A1W2PRG6 482 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF503-AS2A6NEH8 195 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 VSTM5A8MXK1 200 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 CXCR6O00574 342 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 NME4O00746 187 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 ENTPD5O75356 428 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 OR7A10O76100 309 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 ZNF682O95780 498 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 HLA-HP01893 362 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 OR4A8P0C604 315 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 B4GALT1P15291 398 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 CALCRP30988 508 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 DSCR9P59020 149 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 SNRPD2P62316 118 aaKnown RBP13.26□□□□□ -0.29
TRIM28-203ENST00000593582 RPL18Q07020 188 aaKnown RBP13.26□□□□□ -0.29
TRIM28-203ENST00000593582 MELKQ14680 651 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 SWI5Q1ZZU3 235 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 GSG1Q2KHT4 349 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 C8orf82Q6P1X6 216 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-203ENST00000593582 VHLLQ6RSH7 139 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 CLEC2AQ6UVW9 174 aa13.26□□□□□ -0.29
TRIM28-203ENST00000593582 VTCN1Q7Z7D3 282 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms