RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ADGRE4PQ86SQ3 457 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 Q8NA96 180 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 BPIFB6Q8NFQ5 453 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 OR9K2Q8NGE7 335 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 OR2T4Q8NH00 348 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 OR4K13Q8NH42 304 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 RNF128Q8TEB7 428 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 FAR1Q8WVX9 515 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 PTP4A1Q93096 173 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 MYDGFQ969H8 173 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 SLC25A44Q96H78 314 aaPredicted RBP13.63□□□□□ -0.23
SS18-215ENST00000580642 ZNF71Q9NQZ8 489 aaPredicted RBP13.63□□□□□ -0.23
SS18-215ENST00000580642 FKBP14Q9NWM8 211 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 EMC3Q9P0I2 261 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 KLHL13Q9P2N7 655 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 PCDHGB5Q9Y5G0 923 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 PCDHGB1Q9Y5G3 927 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 FKBP7Q9Y680 259 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 CACNA1GO43497 2377 aa13.63□□□□□ -0.23
SS18-215ENST00000580642 A0A087WXM4 84 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 OR6C65A6NJZ3 312 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 ZNF726A6NNF4 738 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 ZNF724A8MTY0 619 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 FAM20BO75063 409 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 SLC2A10O95528 541 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 IGHG1P01857 330 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 GABRA1P14867 456 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 CDKN2AP42771 156 aaKnown RBP13.62□□□□□ -0.23
SS18-215ENST00000580642 MTNR1AP48039 350 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 CDH11P55287 796 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 RAB40BQ12829 278 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 PON3Q15166 354 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 RNLSQ5VYX0 342 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 NIPAL3Q6P499 406 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 PLBD1Q6P4A8 553 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 LEG1Q6P5S2 330 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 GPAT4Q86UL3 456 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 EXD3Q8N9H8 876 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 TMEM45BQ96B21 275 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 RASD2Q96D21 266 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 KCNK17Q96T54 332 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 NMNAT3Q96T66 252 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 MRPL13Q9BYD1 178 aaKnown RBP13.62□□□□□ -0.23
SS18-215ENST00000580642 BCO1Q9HAY6 547 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 GPR52Q9Y2T5 361 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 MPDZO75970 2070 aa13.62□□□□□ -0.23
SS18-215ENST00000580642 FRYQ5TBA9 3013 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 CFAP47Q6ZTR5 3102 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 OR6C68A6NDL8 312 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 TRIM64CA6NLI5 447 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 ZNF716A6NP11 495 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 ZNF814B7Z6K7 855 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 H0YC42 278 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 ARHGEF9O43307 516 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 RPSAP08865 295 aaKnown RBP13.61□□□□□ -0.23
SS18-215ENST00000580642 DBTP11182 482 aaKnown RBP13.61□□□□□ -0.23
SS18-215ENST00000580642 HLA-DOBP13765 273 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 SLC2A5P22732 501 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 FMO3P31513 532 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 GGTLC2Q14390 218 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 THEM4Q5T1C6 240 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 ZBTB46Q86UZ6 589 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 EGFL6Q8IUX8 553 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 KDM8Q8N371 416 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 ZNF540Q8NDQ6 660 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 SDR9C7Q8NEX9 313 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 TSPAN14Q8NG11 270 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 DNAJA3Q96EY1 480 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 RBP7Q96R05 134 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 MYCBPQ99417 103 aaPredicted RBP13.61□□□□□ -0.23
SS18-215ENST00000580642 TEAD3Q99594 435 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 CALHM2Q9HA72 323 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 PARPBPQ9NWS1 579 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 DNAJC27Q9NZQ0 273 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 SCOCQ9UIL1 159 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 CAMK2AQ9UQM7 478 aa13.61□□□□□ -0.23
SS18-215ENST00000580642 LOC400499M0QZD8 3231 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 SLC22A23A1A5C7 686 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 CD8B2A6NJW9 211 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 M0R129 80 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 WDR1O75083 606 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 FADS2O95864 444 aaKnown RBP13.6□□□□□ -0.23
SS18-215ENST00000580642 PLGP00747 810 aaPredicted RBP13.6□□□□□ -0.23
SS18-215ENST00000580642 PTGS2P35354 604 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 ZNF133P52736 654 aaPredicted RBP13.6□□□□□ -0.23
SS18-215ENST00000580642 MLLT10P55197 1068 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 BIDP55957 195 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 SRYQ05066 204 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 ZNF91Q05481 1191 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 RASGEF1BQ0VAM2 473 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 STK11Q15831 433 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 SMN1Q16637 294 aaKnown RBP13.6□□□□□ -0.23
SS18-215ENST00000580642 HIST3H3Q16695 136 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 EEF1A1P5Q5VTE0 462 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 ZNF773Q6PK81 442 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 PRSS48Q7RTY5 328 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 POMGNT2Q8NAT1 580 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 ZNF845Q96IR2 970 aaPredicted RBP13.6□□□□□ -0.23
SS18-215ENST00000580642 MNTQ99583 582 aa13.6□□□□□ -0.23
SS18-215ENST00000580642 SLX1AQ9BQ83 275 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms