RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ASB6Q9NWX5 421 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 ERVK-18Q9QC07 812 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 KLHL21Q9UJP4 597 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 RASD1Q9Y272 281 aa22.36■■□□□ 1.17
SHMT1-207ENST00000580002 AQP7O14520 342 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 HTR1AP08908 422 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF43P17038 809 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 KLHL12Q53G59 568 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 RBM48Q5RL73 367 aaKnown RBP22.35■■□□□ 1.17
SHMT1-207ENST00000580002 PDSS1Q5T2R2 415 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 GPR139Q6DWJ6 353 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 PCSK4Q6UW60 755 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 CREB3L2Q70SY1 520 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 FCRLAQ7L513 359 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 JAZF1Q86VZ6 243 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 CPNE4Q96A23 557 aaPredicted RBP22.35■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF696Q9H7X3 374 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 SRA1Q9HD15 236 aaKnown RBP22.35■■□□□ 1.17
SHMT1-207ENST00000580002 NOX1Q9Y5S8 564 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 SLC35F4A4IF30 521 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 CCDC182A6NF36 153 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF716A6NP11 495 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 TNFAIP8O95379 198 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 IFNGP01579 166 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 SMIM18P0DKX4 95 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 CLDN17P56750 224 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 CAMK2DQ13557 499 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 APOFQ13790 326 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 CARD17Q5XLA6 110 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 NIPAL3Q6P499 406 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 LYPD4Q6UWN0 246 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 SHFQ7M4L6 423 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 TEX19Q8NA77 164 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF540Q8NDQ6 660 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF566Q969W8 418 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 SNRNP40Q96DI7 357 aaKnown RBP22.35■■□□□ 1.17
SHMT1-207ENST00000580002 ZHX1-C8orf76Q96EF9 292 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 NMNAT2Q9BZQ4 307 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 SYT4Q9H2B2 425 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 PSORS1C1Q9UIG5 152 aa22.35■■□□□ 1.17
SHMT1-207ENST00000580002 LOC102725191A0A1B0GVB3 256 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 MAGEA13PA6NCF6 341 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 DNPH1O43598 174 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 TRMUO75648 421 aaKnown RBP22.34■■□□□ 1.17
SHMT1-207ENST00000580002 GPANK1O95872 356 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 TGM6O95932 706 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 CRYABP02511 175 aaKnown RBP22.34■■□□□ 1.17
SHMT1-207ENST00000580002 SLC2A5P22732 501 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 PYCR1P32322 319 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 CXCR4P61073 352 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 ZNF91Q05481 1191 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 ETFDHQ16134 617 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 INAQ16352 499 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 EMC4Q5J8M3 183 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 NXNL2Q5VZ03 156 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 OTPQ5XKR4 325 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 ABLIM2Q6H8Q1 611 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 FAM180AQ6UWF9 173 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 AHSA2Q719I0 299 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 SMAP2Q8WU79 429 aaPredicted RBP22.34■■□□□ 1.17
SHMT1-207ENST00000580002 GPR137Q96N19 417 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 FOXN4Q96NZ1 517 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 NDEL1Q9GZM8 345 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 TIGARQ9NQ88 270 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 CLEC4AQ9UMR7 237 aa22.34■■□□□ 1.17
SHMT1-207ENST00000580002 IGKV1D-43A0A0B4J1Z2 117 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 CCDC159P0C7I6 412 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 DBTP11182 482 aaKnown RBP22.33■■□□□ 1.17
SHMT1-207ENST00000580002 CDH11P55287 796 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 RPS3AP61247 264 aaKnown RBP22.33■■□□□ 1.17
SHMT1-207ENST00000580002 FMODQ06828 376 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 OR6V1Q8N148 313 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 KISS1RQ969F8 398 aaPredicted RBP22.33■■□□□ 1.17
SHMT1-207ENST00000580002 PRDM14Q9GZV8 571 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 SLC25A18Q9H1K4 315 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 RERGLQ9H628 205 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 PLCXD1Q9NUJ7 323 aa22.33■■□□□ 1.17
SHMT1-207ENST00000580002 PRSS37A4D1T9 235 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 TRIM64A6NGJ6 449 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 CLCA1A8K7I4 914 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 PRODHO43272 600 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 CYTIPO60759 359 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 EEF1B2P24534 225 aaKnown RBP22.33■■□□□ 1.16
SHMT1-207ENST00000580002 SLC15A1P46059 708 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 TEKQ02763 1124 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 LGALS3BPQ08380 585 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 ZC3HAV1Q7Z2W4 902 aaKnown RBP22.33■■□□□ 1.16
SHMT1-207ENST00000580002 CNTNAP3BQ96NU0 1288 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 YTHDF1Q9BYJ9 559 aaKnown RBP22.33■■□□□ 1.16
SHMT1-207ENST00000580002 CNTNAP3Q9BZ76 1288 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 NUAK2Q9H093 628 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 DUSP21Q9H596 190 aa22.33■■□□□ 1.16
SHMT1-207ENST00000580002 SLC22A23A1A5C7 686 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 SH3D21A4FU49 640 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 XKRYO14609 159 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 STSP08842 583 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 SPI1P17947 270 aa22.32■■□□□ 1.16
SHMT1-207ENST00000580002 C21orf33P30042 268 aaPredicted RBP22.32■■□□□ 1.16
SHMT1-207ENST00000580002 DAP3P51398 398 aaKnown RBP22.32■■□□□ 1.16
SHMT1-207ENST00000580002 SLC16A1P53985 500 aa22.32■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms