RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ZNF226Q9NYT6 803 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 RCE1Q9Y256 329 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 ZNF835Q9Y2P0 537 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 FLVCR1Q9Y5Y0 555 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 SNTNA6NMZ2 147 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 ZNF726A6NNF4 738 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 TLX2O43763 284 aaPredicted RBP9.56□□□□□ -0.88
SS18-213ENST00000579640 PRKYO43930 277 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 AQP8O94778 261 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 RENP00797 406 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 NR2C1P13056 603 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 GABRB1P18505 474 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 ACVR2AP27037 513 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 BIDP55957 195 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 CLDN17P56750 224 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 CD47Q08722 323 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 NFATC3Q12968 1075 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 MELKQ14680 651 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 OCLNQ16625 522 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 MESTQ5EB52 335 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 ZNF362Q5T0B9 420 aaPredicted RBP9.56□□□□□ -0.88
SS18-213ENST00000579640 NSUN5P2Q63ZY6 315 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 OR2A2Q6IF42 318 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 CD163Q86VB7 1156 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 SLC37A3Q8NCC5 494 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 FNDC8Q8TC99 324 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 ABHD3Q8WU67 409 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 TM9SF2Q99805 663 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 ALG12Q9BV10 488 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 TP63Q9H3D4 680 aaPredicted RBP9.56□□□□□ -0.88
SS18-213ENST00000579640 CLN6Q9NWW5 311 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 MED29Q9NX70 200 aa9.56□□□□□ -0.88
SS18-213ENST00000579640 PRSS37A4D1T9 235 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 SH3D21A4FU49 640 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 SLC35F4A4IF30 521 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 PRR23D1E9PI22 279 aaPredicted RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 ARHGEF9O43307 516 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 SLC2A10O95528 541 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 TGM6O95932 706 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 IGHG1P01857 330 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 YES1P07947 543 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 PRR23D2P0DMB1 279 aaPredicted RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 SLC25A1P53007 311 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 MLLT10P55197 1068 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 CDK5R2Q13319 367 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 ITGADQ13349 1161 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 CRMP1Q14194 572 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 EIF2S3LQ2VIR3 472 aaKnown RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 TMEM201Q5SNT2 666 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 C1orf185Q5T7R7 199 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 NXNL2Q5VZ03 156 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 LEG1Q6P5S2 330 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 CXXC5Q7LFL8 322 aaKnown RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 GID4Q8IVV7 300 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 ZIC4Q8N9L1 334 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 NPEPL1Q8NDH3 523 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 SDR9C7Q8NEX9 313 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 SLC25A44Q96H78 314 aaPredicted RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 GMPPAQ96IJ6 420 aaPredicted RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 TXNDC15Q96J42 360 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 IL4I1Q96RQ9 567 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 NMNAT3Q96T66 252 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 DDOQ99489 341 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 RASSF1Q9NS23 344 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 PARPBPQ9NWS1 579 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 VSX1Q9NZR4 365 aaPredicted RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 ING1Q9UK53 422 aaPredicted RBP9.55□□□□□ -0.88
SS18-213ENST00000579640 GTF3C1Q12789 2109 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 ZZEF1O43149 2961 aa9.55□□□□□ -0.88
SS18-213ENST00000579640 MBD3L4A6NDZ8 208 aaPredicted RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 MBD3L3A6NE82 208 aaPredicted RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 MBD3L5A6NJ08 208 aaPredicted RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 OR6C65A6NJZ3 312 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 KDM4EB2RXH2 506 aaPredicted RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 ZNHIT1O43257 154 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 SLC19A2O60779 497 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 TRMUO75648 421 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 CDKN2AP42771 156 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 CXCR4P61073 352 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 CSNK2BP67870 215 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 AAED1Q7RTV5 226 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 CPOQ8IVL8 374 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 MBD3L2Q8NHZ7 208 aaPredicted RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 HDAC2Q92769 488 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 RFKQ969G6 155 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 UBE2FQ969M7 185 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 ZNF566Q969W8 418 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 INTS12Q96CB8 462 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 LRR1Q96L50 414 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 ZFP3Q96NJ6 502 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 ZNF385AQ96PM9 386 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 KCNK17Q96T54 332 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 MRPL13Q9BYD1 178 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 HINT3Q9NQE9 182 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 H2AFY2Q9P0M6 372 aaPredicted RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 GPR52Q9Y2T5 361 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 NOSIPQ9Y314 301 aaKnown RBP9.54□□□□□ -0.88
SS18-213ENST00000579640 ATMQ13315 3056 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 BSNQ9UPA5 3926 aa9.54□□□□□ -0.88
SS18-213ENST00000579640 OR6C68A6NDL8 312 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms