RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 TIMMDC1Q9NPL8 285 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 CMC2Q9NRP2 79 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 EDARQ9UNE0 448 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 RPH3AQ9Y2J0 694 aaPredicted RBP9.12□□□□□ -0.95
SS18-207ENST00000577636 GPR52Q9Y2T5 361 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 CEPT1Q9Y6K0 416 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 COMMD3-BMI1R4GMX3 469 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 HCFC1P51610 2035 aa9.12□□□□□ -0.95
SS18-207ENST00000577636 A0A087WZY1 265 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 IGLV3-32A0A0A0MS00 114 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 A0A0G2JNJ9 132 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SLC22A31A6NKX4 558 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 BLOC1S5-TXNDC5H3BN57 136 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ACOT7O00154 380 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 CDK2AP1O14519 115 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SNX4O95219 450 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 PPP1R3DO95685 299 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 P04436 131 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 GLI4P10075 376 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 PRKCAP17252 672 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 PCMT1P22061 227 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 DCKP27707 260 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 HTR1FP30939 366 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 UQCRC1P31930 480 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 EIF1P41567 113 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 MAP2K4P45985 399 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 RPS5P46782 204 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 RPS7P62081 194 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 EFNB1P98172 346 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.11□□□□□ -0.95
SS18-207ENST00000577636 ALG10Q5BKT4 473 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SLC35F1Q5T1Q4 408 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 FAM69AQ5T7M9 428 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SYT6Q5T7P8 510 aaPredicted RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 LCN1P1Q5VSP4 162 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 C1orf140Q5VVS0 124 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 UBE2UQ5VVX9 321 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 FOXB2Q5VYV0 432 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SLC22A10Q63ZE4 541 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 OR5M10Q6IEU7 315 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 TMEM81Q6P7N7 255 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ZNF367Q7RTV3 350 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 JAZF1Q86VZ6 243 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 CDC20BQ86Y33 519 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 CPOQ8IVL8 374 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ALDH16A1Q8IZ83 802 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ARMC10Q8N2F6 343 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ZFP62Q8NB50 900 aaPredicted RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 OR6S1Q8NH40 331 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SGCDQ92629 289 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ISOC1Q96CN7 298 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 NMD3Q96D46 503 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 MRGPRX4Q96LA9 322 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 MYCBPQ99417 103 aaPredicted RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 BCL7BQ9BQE9 202 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 RHNO1Q9BSD3 238 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 TAPBPLQ9BX59 468 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 RTN4RQ9BZR6 473 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 RBM38Q9H0Z9 239 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 LDAHQ9H6V9 325 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 GALNT9Q9HCQ5 603 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 SACM1LQ9NTJ5 587 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 DEPPQ9NTK1 212 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 PTTG2Q9NZH5 202 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 MED11Q9P086 117 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 Q9UFV3 132 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 DIMT1Q9UNQ2 313 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 EXOSC1Q9Y3B2 195 aaKnown RBP9.11□□□□□ -0.95
SS18-207ENST00000577636 LIPGQ9Y5X9 500 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 ABCA4P78363 2273 aa9.11□□□□□ -0.95
SS18-207ENST00000577636 IGKV1D-42A0A075B6H8 117 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 C2orf72A6NCS6 295 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 FIGNL2A6NMB9 653 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 IMPA2O14732 288 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 ARPC3O15145 178 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 ZNF208O43345 1280 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 ZNF354AO60765 605 aaPredicted RBP9.1□□□□□ -0.95
SS18-207ENST00000577636 INMTO95050 263 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 TFPIP10646 304 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 APEHP13798 732 aaKnown RBP9.1□□□□□ -0.95
SS18-207ENST00000577636 FOSL1P15407 271 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 C21orf33P30042 268 aaPredicted RBP9.1□□□□□ -0.95
SS18-207ENST00000577636 GSTT1P30711 240 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 SLC15A1P46059 708 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 SLC16A1P53985 500 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 GAS1P54826 345 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 POU4F2Q12837 409 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 MED22Q15528 200 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 TOMM34Q15785 309 aaPredicted RBP9.1□□□□□ -0.95
SS18-207ENST00000577636 TIGD6Q17RP2 521 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 TIMM50Q3ZCQ8 353 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 KLHL12Q53G59 568 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 AADACL4Q5VUY2 407 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 RNLSQ5VYX0 342 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 GPR139Q6DWJ6 353 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 PLBD1Q6P4A8 553 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 LYPD8Q6UX82 237 aa9.1□□□□□ -0.95
SS18-207ENST00000577636 MEPCEQ7L2J0 689 aaKnown RBP9.1□□□□□ -0.95
SS18-207ENST00000577636 SLC46A3Q7Z3Q1 461 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms