RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TPM3P06753 285 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 MELTFP08582 738 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ACSM4P0C7M7 580 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PRPS2P11908 318 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ZNF250P15622 560 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CTRB1P17538 263 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 TCN1P20061 433 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 ATP6V1B2P21281 511 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 VDAC1P21796 283 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 IGHV1-2P23083 117 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 UGT1A3P35503 534 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 DEKP35659 375 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 SLC26A3P40879 764 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 NBL1P41271 181 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CRISP1P54107 249 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ERVK11-1P61568 191 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 STXBP1P61764 594 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 LMO4P61968 165 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PSMC5P62195 406 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 RPS15AP62244 130 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 ACTA2P62736 377 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ACTG2P63267 376 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ACTC1P68032 377 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ACTA1P68133 377 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PAX2Q02962 417 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CD300CQ08708 224 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 FCHO2Q0JRZ9 810 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 SERTAD2Q14140 314 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 TRAM2Q15035 370 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PSMD5Q16401 504 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PGGHGQ32M88 737 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 NHLRC3Q5JS37 347 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 KLF17Q5JT82 389 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 RUSC1-AS1Q66K80 236 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 LEMD1Q68G75 181 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 SPECC1LQ69YQ0 1117 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 TIGD3Q6B0B8 471 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CTRB2Q6GPI1 263 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 C1orf94Q6P1W5 598 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 MBOAT1Q6ZNC8 495 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ZNF621Q6ZSS3 439 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 SLC35D2Q76EJ3 337 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ARCQ7LC44 396 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 BHLHA9Q7RTU4 235 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PID1Q7Z2X4 250 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 FAM122BQ7Z309 247 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ZNF571Q7Z3V5 609 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 LHFPL3Q86UP9 236 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CD302Q8IX05 232 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PRR22Q8IZ63 422 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PUSL1Q8N0Z8 303 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 PDIK1LQ8N165 341 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 TRAM1L1Q8N609 369 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 PRELID2Q8N945 189 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 OR5K2Q8NHB8 316 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ANGPTL6Q8NI99 470 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CCDC26Q8TAB7 109 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ZNF564Q8TBZ8 553 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 VN1R17PQ8TDU5 208 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CACNG8Q8WXS5 425 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 SMARCD2Q92925 531 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 FAM131CQ96AQ9 280 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CCDC124Q96CT7 223 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 POM121L2Q96KW2 1035 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 GLT1D1Q96MS3 346 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 NOL4LQ96MY1 436 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 TSSK3Q96PN8 268 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 MCCC1Q96RQ3 725 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 LITAFQ99732 161 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 NAPGQ99747 312 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 RARRES2Q99969 163 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 KCTD14Q9BQ13 255 aaPredicted RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 KLHDC3Q9BQ90 382 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 WACQ9BTA9 647 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 RNF126Q9BV68 326 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 FGFBP2Q9BYJ0 223 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 NDEL1Q9GZM8 345 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ZBP1Q9H171 429 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 OR52A5Q9H2C5 316 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 TMPRSS5Q9H3S3 457 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 RNF167Q9H6Y7 350 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 HEXA-AS1Q9H8Q6 139 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ISG20L2Q9H9L3 353 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 NTN4Q9HB63 628 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 LY9Q9HBG7 655 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CSNK1G1Q9HCP0 422 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 MRPL47Q9HD33 250 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 AGPAT4Q9NRZ5 378 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 TXLNGQ9NUQ3 528 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 UBAP1Q9NZ09 502 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ADA2Q9NZK5 511 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ADAM22Q9P0K1 906 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 ARMCX1Q9P291 453 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 STX18Q9P2W9 335 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 DPM3Q9P2X0 92 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 CTSZQ9UBR2 303 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 RSPH14Q9UHP6 348 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 MUTYHQ9UIF7 546 aa1.66□□□□□ -2.14
CHD3-217ENST00000574022 UBQLN1Q9UMX0 589 aaKnown RBP1.66□□□□□ -2.14
CHD3-217ENST00000574022 YARS2Q9Y2Z4 477 aaKnown RBP1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms