RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GLRXP35754 106 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 MAP2K6P52564 334 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 SLC9A3R2Q15599 337 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 HFEQ30201 348 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 PCGF3Q3KNV8 242 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 ARHGAP11BQ3KRB8 267 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 SPANXN4Q5MJ08 99 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 PRAMEF8Q5VWM4 474 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 PRAMEF7Q5VXH5 474 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 OR4F3Q6IEY1 312 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 CMIPQ8IY22 773 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 OR4A15Q8NGL6 344 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 OR5AK3PQ8NH89 298 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 WFDC12Q8WWY7 111 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 ITCHQ96J02 903 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 OR52E6Q96RD3 313 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 PANX1Q96RD7 426 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 MRI1Q9BV20 369 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 CCDC134Q9H6E4 229 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 WDR55Q9H6Y2 383 aaPredicted RBP9.46□□□□□ -0.9
VPS53-207ENST00000570510 CALML5Q9NZT1 146 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 MMP24Q9Y5R2 645 aa9.46□□□□□ -0.9
VPS53-207ENST00000570510 AQP7P3A6NL99 342 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 RFXANKO14593 260 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 DEAF1O75398 565 aaPredicted RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 FOXH1O75593 365 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 SASH3O75995 380 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 FSHBP01225 129 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 MT-ND5P03915 603 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 KITP10721 976 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 PPIBP23284 216 aaKnown RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 TACR3P29371 465 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 PGM1P36871 562 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 MAGEB1P43366 347 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 POLR2JP52435 117 aaKnown RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 UFM1P61960 85 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 GSG1Q2KHT4 349 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 NXNQ6DKJ4 435 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 CREB3L2Q70SY1 520 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 LRP11Q86VZ4 500 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 BCL6BQ8N143 479 aaPredicted RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 FAM110DQ8TAY7 271 aaPredicted RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 SLC35G5Q96KT7 338 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 C1orf147Q96MC9 270 aaPredicted RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 TRNT1Q96Q11 434 aaKnown RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 RBM4BQ9BQ04 359 aaKnown RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 SLC30A2Q9BRI3 323 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 ZNF350Q9GZX5 532 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 HINT3Q9NQE9 182 aaKnown RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 TAAR3PQ9P1P4 343 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 MARCOQ9UEW3 520 aaPredicted RBP9.45□□□□□ -0.9
VPS53-207ENST00000570510 OSGIN1Q9UJX0 560 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 WIPI2Q9Y4P8 454 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 WNK2Q9Y3S1 2297 aa9.45□□□□□ -0.9
VPS53-207ENST00000570510 CCDC154A6NI56 674 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 LIPT2A6NK58 231 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 EDF1O60869 148 aaKnown RBP9.44□□□□□ -0.9
VPS53-207ENST00000570510 SLC43A1O75387 559 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 RAB36O95755 333 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 CHRM4P08173 479 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 GTF2E2P29084 291 aaKnown RBP9.44□□□□□ -0.9
VPS53-207ENST00000570510 CRYBB2P43320 205 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 IDH3AP50213 366 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 RAG2P55895 527 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 RPS26P62854 115 aaKnown RBP9.44□□□□□ -0.9
VPS53-207ENST00000570510 KCNJ10P78508 379 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 HPCAP84074 193 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 PIGFQ07326 219 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 FADDQ13158 208 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 CEACAM16Q2WEN9 425 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 OLFML2AQ68BL7 652 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 LINGO2Q7L985 606 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 MAVSQ7Z434 540 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 ANKK1Q8NFD2 765 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 SLC35B4Q969S0 331 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 ZDHHC16Q969W1 377 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 PPP1R36Q96LQ0 422 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 SLC35A5Q9BS91 424 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 LINC00470Q9BZP3 86 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 EVA1AQ9H8M9 152 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 EXOSC3Q9NQT5 275 aaKnown RBP9.44□□□□□ -0.9
VPS53-207ENST00000570510 TNFRSF19Q9NS68 423 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 MYEF2Q9P2K5 600 aaKnown RBP9.44□□□□□ -0.9
VPS53-207ENST00000570510 KCNE5Q9UJ90 142 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 CORO2BQ9UQ03 480 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 WDR45Q9Y484 360 aa9.44□□□□□ -0.9
VPS53-207ENST00000570510 CENPVL1A0A0U1RR11 272 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 SLC22A23A1A5C7 686 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 ZC3H12DA2A288 527 aaKnown RBP9.43□□□□□ -0.9
VPS53-207ENST00000570510 TMEM247A6NEH6 219 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 AGAP5A6NIR3 686 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 C17orf100A8MU93 164 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 TMEM229AB2RXF0 380 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 C3orf80F5H4A9 247 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 SLC22A2O15244 555 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 SEC14L2O76054 403 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 HLA-HP01893 362 aa9.43□□□□□ -0.9
VPS53-207ENST00000570510 TROVE2P10155 538 aaKnown RBP eCLIP9.43□□□□□ -0.9
VPS53-207ENST00000570510 BMP2P12643 396 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms