RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NSUN5P2Q63ZY6 315 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 GLYATQ6IB77 296 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR52W1Q6IF63 320 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 GRHL2Q6ISB3 625 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 REEP3Q6NUK4 255 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 GTF2H2CQ6P1K8 395 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TMEM270Q6UE05 265 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CLEC18BQ6UXF7 455 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TMPRSS11AQ6ZMR5 421 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ZNF836Q6ZNA1 936 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 LINC00696Q6ZRV3 163 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 AHSA2Q719I0 299 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SLC35D2Q76EJ3 337 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KCTD9Q7L273 389 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 YRDCQ86U90 279 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 PIGZQ86VD9 579 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SLC47A2Q86VL8 602 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 AMZ2Q86W34 360 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 COMMD2Q86X83 199 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 RNF130Q86XS8 419 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 KIR2DL5AQ8N109 375 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FBXO39Q8N4B4 442 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ACBD7Q8N6N7 88 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CLDN22Q8N7P3 220 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CLEC18CQ8NCF0 446 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PXT1Q8NFP0 134 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR56B1Q8NGI3 324 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR5L2Q8NGL0 311 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR5M9Q8NGP3 310 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR9Q1Q8NGQ5 310 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR2T11Q8NH01 316 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR4C6Q8NH72 309 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MBD3L2Q8NHZ7 208 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 THAP6Q8TBB0 222 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 CD200R1Q8TD46 325 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ABHD3Q8WU67 409 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ASB5Q8WWX0 329 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 RLN3Q8WXF3 142 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 RAB1CQ92928 201 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ADIPOR1Q96A54 375 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ULK4Q96C45 1275 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ZBED6CLQ96FA7 236 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 CERS2Q96G23 380 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TMEM19Q96HH6 336 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PGAM5Q96HS1 289 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TGM7Q96PF1 710 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 RNF157Q96PX1 679 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR2M2Q96R28 347 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 OR2V2Q96R30 315 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 F2RL3Q96RI0 385 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PAFAH2Q99487 392 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MTERF1Q99551 399 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 SEMA3CQ99985 751 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 TMEM47Q9BQJ4 181 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FEM1AQ9BSK4 669 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FICDQ9BVA6 458 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ELOVL1Q9BW60 279 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ITPAQ9BY32 194 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 WWTR1Q9GZV5 400 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MED28Q9H204 178 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ABCG5Q9H222 651 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ARV1Q9H2C2 271 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SLC38A1Q9H2H9 487 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PIGMQ9H3S5 423 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SAP30LQ9HAJ7 183 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 POPDC2Q9HBU9 364 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ZBTB20Q9HC78 741 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 ZBTB26Q9HCK0 441 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ISYNA1Q9NPH2 558 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SMCO4Q9NRQ5 59 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 SIRT3Q9NTG7 399 aaPredicted RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 C2orf42Q9NWW7 574 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 C1orf109Q9NX04 203 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ELOVL5Q9NYP7 299 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 HAO2Q9NYQ3 351 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 RHCGQ9UBD6 479 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 IL17BQ9UHF5 180 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 MRTO4Q9UKD2 239 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 CCL27Q9Y4X3 112 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 ALG6Q9Y672 507 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 V9GYS6 101 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 DDX60LQ5H9U9 1706 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 NUP188Q5SRE5 1749 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 PKD1L3Q7Z443 1732 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 FLT4P35916 1363 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 BAZ2AQ9UIF9 1905 aaKnown RBP2.95□□□□□ -1.94
VPS35-208ENST00000568612 ERCC6L2Q5T890 1561 aa2.95□□□□□ -1.94
VPS35-208ENST00000568612 DOCK1Q14185 1865 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 USP6P35125 1406 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 PRG4Q92954 1404 aaPredicted RBP2.94□□□□□ -1.94
VPS35-208ENST00000568612 PAPPAQ13219 1627 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 QSER1Q2KHR3 1735 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 SLX4Q8IY92 1834 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 A0A087WUJ7 227 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 A0A087WZ62 844 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 IQCMA0A1B0GVH7 501 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 DHRS12A0PJE2 317 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 C20orf202A1L168 122 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 CPED1A4D0V7 1026 aa2.94□□□□□ -1.94
VPS35-208ENST00000568612 TRAPPC13A5PLN9 417 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms