RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 CARD17Q5XLA6 110 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 ANKRD16Q6P6B7 361 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 TMEM108Q6UXF1 575 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 ZNF704Q6ZNC4 412 aaPredicted RBP11.41□□□□□ -0.58
CLK3-224ENST00000568605 C20orf204Q6ZNR8 217 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 C22orf34Q6ZV56 151 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 OR1K1Q8NGR3 316 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 OR6X1Q8NH79 312 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 SLC7A13Q8TCU3 470 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 ZNF566Q969W8 418 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 SLC25A44Q96H78 314 aaPredicted RBP11.41□□□□□ -0.58
CLK3-224ENST00000568605 C7orf34Q96L11 122 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 THTPAQ9BU02 230 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 EMC6Q9BV81 110 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 MAGIXQ9H6Y5 334 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 IL1RAPQ9NPH3 570 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 SLC17A5Q9NRA2 495 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 TAS2R5Q9NYW4 299 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 ST6GALNAC2Q9UJ37 374 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 MGAT4BQ9UQ53 548 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 AURKCQ9UQB9 309 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 HIF3AQ9Y2N7 669 aa11.41□□□□□ -0.58
CLK3-224ENST00000568605 A0A087WUU8 490 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 ZNF99A8MXY4 864 aaPredicted RBP11.4□□□□□ -0.58
CLK3-224ENST00000568605 CENPBD1B2RD01 187 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 KLF4O43474 513 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 ATP5HO75947 161 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 HOXB1P14653 301 aaPredicted RBP11.4□□□□□ -0.58
CLK3-224ENST00000568605 PTAFRP25105 342 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 IFNGR2P38484 337 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 GPR4P46093 362 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 CLRN1P58418 232 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 RPS4XP62701 263 aaKnown RBP11.4□□□□□ -0.58
CLK3-224ENST00000568605 BSPH1Q075Z2 132 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 LGALS3BPQ08380 585 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 CEACAM16Q2WEN9 425 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 TBRG1Q3YBR2 411 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 FAM98BQ52LJ0 330 aaKnown RBP11.4□□□□□ -0.58
CLK3-224ENST00000568605 NCMAPQ5T1S8 102 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 FAM205BPQ63HN1 556 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 TMPRSS11FQ6ZWK6 438 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 OAFQ86UD1 273 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 ZDHHC21Q8IVQ6 265 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 CCDC36Q8IYA8 594 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 C20orf196Q8IYI0 205 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 MAGEE2Q8TD90 523 aaPredicted RBP11.4□□□□□ -0.58
CLK3-224ENST00000568605 NANOS1Q8WY41 292 aaKnown RBP11.4□□□□□ -0.58
CLK3-224ENST00000568605 BOD1Q96IK1 185 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 RADILQ96JH8 1075 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 DHRS1Q96LJ7 313 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 SEPHS2Q99611 448 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 BTBD10Q9BSF8 475 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 PLEKHF2Q9H8W4 249 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 UBTD1Q9HAC8 227 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 CRLF2Q9HC73 371 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 GPR35Q9HC97 309 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 TMCC3Q9ULS5 477 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 SLC25A15Q9Y619 301 aa11.4□□□□□ -0.58
CLK3-224ENST00000568605 ARPC4-TTLL3A0A0A6YYG9 625 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 DIRAS1O95057 198 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 F13BP05160 661 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 TSPAN19P0C672 248 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 RRM2P31350 389 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 AQP2P41181 271 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 FOXG1P55316 489 aaPredicted RBP11.39□□□□□ -0.59
CLK3-224ENST00000568605 CHRNB3Q05901 458 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 TRAP1Q12931 704 aaKnown RBP11.39□□□□□ -0.59
CLK3-224ENST00000568605 MELKQ14680 651 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 PODNL1Q6PEZ8 512 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 SEZ6L2Q6UXD5 910 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 PIWIL3Q7Z3Z3 882 aaKnown RBP11.39□□□□□ -0.59
CLK3-224ENST00000568605 DEPDC4Q8N2C3 294 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 NOXO1Q8NFA2 376 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 OR4K5Q8NGD3 323 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 FNDC8Q8TC99 324 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 ASB10Q8WXI3 467 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 FAM46AQ96IP4 442 aaKnown RBP11.39□□□□□ -0.59
CLK3-224ENST00000568605 TXNDC15Q96J42 360 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 HS3ST6Q96QI5 342 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 KCNS3Q9BQ31 491 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 POFUT2Q9Y2G5 429 aa11.39□□□□□ -0.59
CLK3-224ENST00000568605 PRRC2AP48634 2157 aaKnown RBP11.38□□□□□ -0.59
CLK3-224ENST00000568605 TRAV27A0A087WT01 109 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 A0A1W2PR80 420 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 M0R1B8 84 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 ABCD4O14678 606 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 DNAJC8O75937 253 aaPredicted RBP11.38□□□□□ -0.59
CLK3-224ENST00000568605 KRT36O76013 467 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 IGHMP01871 453 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 PGA4P0DJD7 388 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 PGA3P0DJD8 388 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 MAKP20794 623 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 LOXP28300 417 aaPredicted RBP11.38□□□□□ -0.59
CLK3-224ENST00000568605 RPL4P36578 427 aaKnown RBP11.38□□□□□ -0.59
CLK3-224ENST00000568605 CAPZA2P47755 286 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 ZNF83P51522 516 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 ZNF84P51523 738 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 FLOT2Q14254 428 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 ACKR1Q16570 336 aa11.38□□□□□ -0.59
CLK3-224ENST00000568605 HIKESHIQ53FT3 197 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms