RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 IGHV5-51A0A0C4DH38 117 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 CIB4A0PJX0 185 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 A8MUI8 341 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 INS-IGF2F8WCM5 200 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 RBFOX2O43251 390 aaKnown RBP eCLIP1.32□□□□□ -2.2
VPS35-207ENST00000568191 SLC25A14O95258 325 aaPredicted RBP1.32□□□□□ -2.2
VPS35-207ENST00000568191 MPZL1O95297 269 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 AP2A1O95782 977 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 BGLAPP02818 100 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 IMPDH1P20839 514 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 TNFRSF17Q02223 184 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 RAET1LQ5VY80 246 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 TTC23Q5W5X9 447 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 FAM92BQ6ZTR7 304 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 ZADH2Q8N4Q0 377 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 CCDC110Q8TBZ0 833 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 ACOT11Q8WXI4 607 aaPredicted RBP1.32□□□□□ -2.2
VPS35-207ENST00000568191 UFD1Q92890 307 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 PDXPQ96GD0 296 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 TGM7Q96PF1 710 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 TUBGCP2Q9BSJ2 902 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 RAB33BQ9H082 229 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 LRRN3Q9H3W5 708 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 ZNF586Q9NXT0 402 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 CALYQ9NYX4 217 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 CD84Q9UIB8 345 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 NFASCO94856 1347 aa1.32□□□□□ -2.2
VPS35-207ENST00000568191 SHANK1Q9Y566 2161 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 FBN1P35555 2871 aaKnown RBP1.31□□□□□ -2.2
VPS35-207ENST00000568191 F5H6K3 240 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 RAMP3O60896 148 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 SRP72O76094 671 aaKnown RBP1.31□□□□□ -2.2
VPS35-207ENST00000568191 UGT2B4P06133 528 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 CSF3P09919 207 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 GKN3PP0CG01 181 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 SMIM10L1P0DMW3 83 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 CX3CR1P49238 355 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 RAP1AP62834 184 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 KLRC3Q07444 240 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 ELP6Q0PNE2 266 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 KLRB1Q12918 225 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 C1orf220Q5T0J3 134 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 BEND3Q5T5X7 828 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 CNIH2Q6PI25 160 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 GET4Q7L5D6 327 aaPredicted RBP1.31□□□□□ -2.2
VPS35-207ENST00000568191 ECHDC2Q86YB7 292 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 CCDC50Q8IVM0 306 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 STPG2Q8N412 459 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 C15orf56Q8N910 161 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 ANKFN1Q8N957 763 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 GATSQ8NAP1 163 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 FNDC5Q8NAU1 212 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 OR10G4Q8NGN3 311 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 FGF14Q92915 247 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 SMIM10Q96HG1 83 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 C7orf34Q96L11 122 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 SLC38A2Q96QD8 506 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 MTMR9Q96QG7 549 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 DOK1Q99704 481 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 GPA33Q99795 319 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 OMDQ99983 421 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 RPP21Q9H633 154 aaKnown RBP1.31□□□□□ -2.2
VPS35-207ENST00000568191 LY9Q9HBG7 655 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 HMG20AQ9NP66 347 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 UFSP2Q9NUQ7 469 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 SPATA7Q9P0W8 599 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 XCL2Q9UBD3 114 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 KCNIP3Q9Y2W7 256 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 MMACHCQ9Y4U1 282 aa1.31□□□□□ -2.2
VPS35-207ENST00000568191 MN1Q10571 1320 aaPredicted RBP1.31□□□□□ -2.2
VPS35-207ENST00000568191 IGKV2-24A0A0C4DH68 120 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 A0A1B0GVX0 72 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 BICDL2A1A5D9 508 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 B3GALNT1O75752 331 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 IGHV3-43DP0DP04 118 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 PRPS2P11908 318 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 RPA2P15927 270 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 CALRP27797 417 aaKnown RBP1.3□□□□□ -2.2
VPS35-207ENST00000568191 GNA11P29992 359 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 NAMPTP43490 491 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 CYB561P49447 251 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 PPT1P50897 306 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 CBX1P83916 185 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 PRPSAP1Q14558 356 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 CDC37Q16543 378 aaPredicted RBP1.3□□□□□ -2.2
VPS35-207ENST00000568191 TAF9Q16594 264 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 PDK4Q16654 411 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 TTLL9Q3SXZ7 439 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 SLC36A3Q495N2 470 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 NADK2Q4G0N4 442 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 RIPPLY2Q5TAB7 128 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 DNAJC24Q6P3W2 148 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 FAM133AQ8N9E0 248 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 MFSD9Q8NBP5 474 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 OR2T3Q8NH03 318 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 ESR2Q92731 530 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 AURKBQ96GD4 344 aaPredicted RBP1.3□□□□□ -2.2
VPS35-207ENST00000568191 PKNOX2Q96KN3 472 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 WFIKKN1Q96NZ8 548 aa1.3□□□□□ -2.2
VPS35-207ENST00000568191 MS4A4EQ96PG1 132 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms