RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 OR10H3O60404 316 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 KRT36O76013 467 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 HLA-DOBP13765 273 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 MAKP20794 623 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 EDNRAP25101 427 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 NTF4P34130 210 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 IFNGR2P38484 337 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 MAGEA2P43356 314 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 SLC9A3P48764 834 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 PCYT1AP49585 367 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 LSM11P83369 360 aaKnown RBP eCLIP15.21■□□□□ 0.03
CLN3-217ENST00000565354 RPL18Q07020 188 aaKnown RBP15.21■□□□□ 0.03
CLN3-217ENST00000565354 ZP4Q12836 540 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 P2RY6Q15077 328 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 IQCCQ4KMZ1 466 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 SFRP5Q5T4F7 317 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 TSPO2Q5TGU0 170 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 STAC2Q6ZMT1 411 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 OAFQ86UD1 273 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 KRTAP1-3Q8IUG1 177 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 ADGRG5Q8IZF4 528 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 GABRG1Q8N1C3 465 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 STEAP2Q8NFT2 490 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 OR4K5Q8NGD3 323 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 CANT1Q8WVQ1 401 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 FAM46AQ96IP4 442 aaKnown RBP15.21■□□□□ 0.03
CLN3-217ENST00000565354 CHID1Q9BWS9 393 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 PLEKHF2Q9H8W4 249 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 REEP1Q9H902 201 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 TAS2R5Q9NYW4 299 aa15.21■□□□□ 0.03
CLN3-217ENST00000565354 SH3PXD2BA1X283 911 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 SH3D21A4FU49 640 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 LYZL6O75951 148 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 CST1P01037 141 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 PSMB1P20618 241 aaKnown RBP15.2■□□□□ 0.02
CLN3-217ENST00000565354 AQP2P41181 271 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 ITGADQ13349 1161 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 CARD17Q5XLA6 110 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 ANKRD34AQ69YU3 496 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 OR2T5Q6IEZ7 315 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 SLC35D2Q76EJ3 337 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 BHLHA15Q7RTS1 189 aaPredicted RBP15.2■□□□□ 0.02
CLN3-217ENST00000565354 GPR137CQ8N3F9 429 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 OR2T29Q8NH02 315 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 OR51A7Q8NH64 312 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 LIPHQ8WWY8 451 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 EMC6Q9BV81 110 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 ACTR6Q9GZN1 396 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 B3GAT2Q9NPZ5 323 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 INIPQ9NRY2 104 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 SLC7A10Q9NS82 523 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 MED29Q9NX70 200 aa15.2■□□□□ 0.02
CLN3-217ENST00000565354 TRAV27A0A087WT01 109 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 SLC35F4A4IF30 521 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 ZNF587BE7ETH6 402 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 CLOCKO15516 846 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 BCL10O95999 233 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 F13BP05160 661 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 EPXP11678 715 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 IFNGR1P15260 489 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 PPP3CBP16298 524 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 IGHV1-2P23083 117 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 BIDP55957 195 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 CAMK2DQ13557 499 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 MELKQ14680 651 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 SEC23BQ15437 767 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 TSC22D1Q15714 1073 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 STK11Q15831 433 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 ANKDD1AQ495B1 522 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 ALG10Q5BKT4 473 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 C9orf135Q5VTT2 229 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 HMBOX1Q6NT76 420 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 TMPRSS11FQ6ZWK6 438 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 ASRGL1Q7L266 308 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 OR13C2Q8NGS9 318 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 ZC3HAV1LQ96H79 300 aaKnown RBP15.19■□□□□ 0.02
CLN3-217ENST00000565354 ADAD1Q96M93 576 aaKnown RBP15.19■□□□□ 0.02
CLN3-217ENST00000565354 DACH2Q96NX9 599 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 ALKBH3Q96Q83 286 aaPredicted RBP15.19■□□□□ 0.02
CLN3-217ENST00000565354 REPIN1Q9BWE0 567 aaKnown RBP15.19■□□□□ 0.02
CLN3-217ENST00000565354 ZNF226Q9NYT6 803 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 TAS2R16Q9NYV7 291 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 MALT1Q9UDY8 824 aa15.19■□□□□ 0.02
CLN3-217ENST00000565354 SAMHD1Q9Y3Z3 626 aaKnown RBP15.19■□□□□ 0.02
CLN3-217ENST00000565354 FBN1P35555 2871 aaKnown RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 TCRBV3S1A0A5B6 114 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 RAD51DO75771 328 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 CCNB2O95067 398 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 LY6G6DO95868 133 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 CDH2P19022 906 aaPredicted RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 CCKARP32238 428 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 RPL4P36578 427 aaKnown RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 DAP3P51398 398 aaKnown RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 NKX6-1P78426 367 aaPredicted RBP15.18■□□□□ 0.02
CLN3-217ENST00000565354 TGFBR3Q03167 851 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 LAPTM4AQ15012 233 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 SHEQ5VZ18 495 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 ALKBH2Q6NS38 261 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 HDDC2Q7Z4H3 204 aa15.18■□□□□ 0.02
CLN3-217ENST00000565354 LINC00471Q8N535 108 aa15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms